Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Mycobacteriaceae

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium tuberculosis H37Rv 1 1
Mycobacterium leprae TN
Mycobacterium marinum M 1 1
Mycobacterium avium 104
Mycobacterium sp. JLS 2 2
Mycobacterium vanbaalenii PYR-1 4 4
Mycobacterium flavescens PYR-GCK 2 2
Mycobacterium smegmatis str. MC2 155 2 2
Mycobacterium abscessus ATCC 19977 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2119
*
Mycobacterium tuberculosis H37Rv

Site:
position = -153
score = 68.43
sequence = ACGTTAGCGAAGGGG...

Gene: Rv3848: Possible transmambrane protein
 
Mycobacterium leprae TN
*
Mycobacterium marinum M

Site:
position = -150
score = 63.99
sequence = CTGTTAGCGAAGGGG...

Gene: MMAR_5398: Possible transmambrane protein
 
Mycobacterium avium 104
*
Mycobacterium sp. JLS

Site:
position = -153
score = 56.46
sequence = AAGTCAGCGAAGGGG...

Gene: Mjls_5425: Possible transmambrane protein
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -190
score = 54.82
sequence = TGGTGGCAGCGAAGG...

Gene: Mvan_4708: Possible transmambrane protein
*
Mycobacterium flavescens PYR-GCK

Site:
position = -193
score = 54.37
sequence = GCGACAACGAAGGGG...

Gene: Mflv_2016: Possible transmambrane protein
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -196
score = 48.4
sequence = TGGCCGTTGCGAAGG...

Gene: MSMEG_5329: Possible transmambrane protein
 
Mycobacterium abscessus ATCC 19977
Possible transmambrane protein
 
CRON 2.
ykoY
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
*
Mycobacterium sp. JLS

Site:
position = -141
score = 61.53
sequence = ATTCTCATCCGGAGG...

Gene: Mjls_5171: Membrane protein TerC, possibly involved in tellurium resistance
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -140
score = 46.89
sequence = TGAGCGGCTTGGAGG...

Gene: Mvan_5385: Membrane protein TerC, possibly involved in tellurium resistance
*
Mycobacterium flavescens PYR-GCK

Site:
position = -137
score = 49.28
sequence = AGCCGCTTGGAGGGG...

Gene: Mflv_1405: Membrane protein TerC, possibly involved in tellurium resistance
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -140
score = 48.61
sequence = ACTTGTCCGCGGAGG...

Gene: MSMEG_6136: Membrane protein TerC, possibly involved in tellurium resistance
*
Mycobacterium abscessus ATCC 19977

Site:
position = -136
score = 52.03
sequence = ACTGACTACTGGAGG...

Gene: MAB_0511c: Membrane protein TerC, possibly involved in tellurium resistance
Membrane protein TerC, possibly involved in tellurium resistance
 
CRON 3.
ykoY2
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -149
score = 54.45
sequence = TGGTCCGTGGAGGGG...

Gene: Mvan_0331: Membrane protein TerC, possibly involved in tellurium resistance
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Membrane protein TerC, possibly involved in tellurium resistance
 
CRON 4.
Mvan_0329
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -186
score = 41.24
sequence = ATTCTGGTGTCGAGG...

Gene: Mvan_0329: Hypothetical protein
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD