Regulog L10_leader - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | ||
| Deinococcus geothermalis DSM 11300 | 2 | 1 |
| Deinococcus deserti VCD115 | 2 | 1 |
| Thermus thermophilus HB27 | 2 | 1 |
| Thermus aquaticus Y51MC23 | 2 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| rplJ |
Gene: DR2044: LSU ribosomal protein L10p (P0) |
*
Deinococcus geothermalis DSM 11300 Site: position = -118 score = 22.23 sequence = CACCTTTCCAATTTC... Gene: Dgeo_0640: LSU ribosomal protein L10p (P0) |
*
Deinococcus deserti VCD115 Site: position = -120 score = 20.45 sequence = ATAGGCCCCAATTCC... Gene: Deide_06060: LSU ribosomal protein L10p (P0) |
*
Thermus thermophilus HB27 Site: position = -123 score = 21.46 sequence = GCCAAAGACAGCGGG... Gene: TTC1777: LSU ribosomal protein L10p (P0) |
*
Thermus aquaticus Y51MC23 Site: position = -115 score = 25.53 sequence = CAAAGACAGCGGGGG... Gene: TaqDRAFT_4672: LSU ribosomal protein L10p (P0) |
LSU ribosomal protein L10p (P0) |
| rplL |
Gene: DR2043: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Dgeo_0639: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Deide_06050: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: TTC1776: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: TaqDRAFT_4673: LSU ribosomal protein L7/L12 (P1/P2) |
LSU ribosomal protein L7/L12 (P1/P2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |