Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1
Deinococcus geothermalis DSM 11300
Deinococcus deserti VCD115 1 1
Thermus thermophilus HB27 4 2
Thermus aquaticus Y51MC23 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yugP
 
Deinococcus radiodurans R1

Gene: DR0194: Zn-dependent protease-like protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1282: Zn-dependent protease-like protein
 
Deinococcus deserti VCD115

Gene: Deide_11220: Zn-dependent protease-like protein
*
Thermus thermophilus HB27

Site:
position = -153
score = 49.21
sequence = AAGTGAGTTCCGGGG...

Gene: TTC0540: Zn-dependent protease-like protein
*2
Thermus aquaticus Y51MC23

Site:
position = -151
score = 50.76
sequence = TATAAAGGCCTCTGG...

Gene: TaqDRAFT_5380: Zn-dependent protease-like protein

Gene: TaqDRAFT_3330: Zn-dependent protease-like protein
Zn-dependent protease-like protein
TTC0541
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115
 
Thermus thermophilus HB27

Gene: TTC0541: Hypothetical conserved protein
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5379: Hypothetical conserved protein
Hypothetical conserved protein
 
CRON 2.
ykoY
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
*
Deinococcus deserti VCD115

Site:
position = -213
score = 31.6
sequence = TTTCACAATTCCGGG...

Gene: Deide_1p00590: Membrane protein TerC, possibly involved in tellurium resistance
*
Thermus thermophilus HB27

Site:
position = -141
score = 42.23
sequence = TACTGGGTCCGGTTG...

Gene: TTC0142: Membrane protein TerC, possibly involved in tellurium resistance
*
Thermus aquaticus Y51MC23

Site:
position = -132
score = 40.21
sequence = AGAATGGCGGTGGTT...

Gene: TaqDRAFT_4462: Membrane protein TerC, possibly involved in tellurium resistance
Membrane protein TerC, possibly involved in tellurium resistance
ykoX
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115
 
Thermus thermophilus HB27

Gene: TTC0141: DedA family protein
 
Thermus aquaticus Y51MC23
DedA family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD