Regulog yybP-ykoY - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | ||
| Deinococcus geothermalis DSM 11300 | ||
| Deinococcus deserti VCD115 | 1 | 1 |
| Thermus thermophilus HB27 | 4 | 2 |
| Thermus aquaticus Y51MC23 | 3 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| yugP |
Gene: DR0194: Zn-dependent protease-like protein |
Gene: Dgeo_1282: Zn-dependent protease-like protein |
Gene: Deide_11220: Zn-dependent protease-like protein |
*
Thermus thermophilus HB27 Site: position = -153 score = 49.21 sequence = AAGTGAGTTCCGGGG... Gene: TTC0540: Zn-dependent protease-like protein |
*2
Thermus aquaticus Y51MC23 Site: position = -151 score = 50.76 sequence = TATAAAGGCCTCTGG... Gene: TaqDRAFT_5380: Zn-dependent protease-like protein Gene: TaqDRAFT_3330: Zn-dependent protease-like protein |
Zn-dependent protease-like protein |
| TTC0541 |
|
|
|
Gene: TTC0541: Hypothetical conserved protein |
Gene: TaqDRAFT_5379: Hypothetical conserved protein |
Hypothetical conserved protein |
| CRON 2. | ||||||
| ykoY |
|
|
*
Deinococcus deserti VCD115 Site: position = -213 score = 31.6 sequence = TTTCACAATTCCGGG... Gene: Deide_1p00590: Membrane protein TerC, possibly involved in tellurium resistance |
*
Thermus thermophilus HB27 Site: position = -141 score = 42.23 sequence = TACTGGGTCCGGTTG... Gene: TTC0142: Membrane protein TerC, possibly involved in tellurium resistance |
*
Thermus aquaticus Y51MC23 Site: position = -132 score = 40.21 sequence = AGAATGGCGGTGGTT... Gene: TaqDRAFT_4462: Membrane protein TerC, possibly involved in tellurium resistance |
Membrane protein TerC, possibly involved in tellurium resistance |
| ykoX |
|
|
|
Gene: TTC0141: DedA family protein |
|
DedA family protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |