Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ybhL - Rhizobiales

Properties
Regulator type: RNA regulatory element
Name: ybhL
RFAM: RF00520
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 1 1
Rhizobium sp. NGR234 1 1
Rhizobium leguminosarum bv. viciae 3841 1 1
Rhizobium etli CFN 42 1 1
Agrobacterium tumefaciens str. C58 (Cereon) 1 1
Mesorhizobium sp. BNC1 1 1
Mesorhizobium loti MAFF303099 1 1
Brucella melitensis 16M 1 1
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ybhL
*
Sinorhizobium meliloti 1021

Site:
position = -100
score = 78.37
sequence = AGGCATGCTGGAGCC...

Gene: SMc03839: Integral membrane protein
*
Rhizobium sp. NGR234

Site:
position = -99
score = 72.41
sequence = ACAGGCATGCTGGAG...

Gene: NGR_c32420: Integral membrane protein
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -80
score = 70.96
sequence = AGGCATGCTGGAGCT...

Gene: RL4532: Integral membrane protein
*
Rhizobium etli CFN 42

Site:
position = -80
score = 68.02
sequence = AGGCATGCTGGAGCT...

Gene: RHE_CH03940: Integral membrane protein
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -78
score = 69.15
sequence = AGGCTTGCTGAAGCT...

Gene: Atu2682: Integral membrane protein
*
Mesorhizobium sp. BNC1

Site:
position = -77
score = 27.27
sequence = ACGCATGCTGGACTC...

Gene: Meso_3353: Integral membrane protein
*
Mesorhizobium loti MAFF303099

Site:
position = -84
score = 55.65
sequence = ACAGGCATGCTGGAG...

Gene: mll4343: Integral membrane protein
*
Brucella melitensis 16M

Site:
position = -95
score = 44.6
sequence = ACAGGCATGCTGGGG...

Gene: BMEI1859: Integral membrane protein
 
Bartonella quintana str. Toulouse

Gene: BQ00080: Integral membrane protein
 
Rhodopseudomonas palustris CGA009

Gene: RPA0198: Integral membrane protein
 2
Bradyrhizobium japonicum USDA 110

Gene: blr0462: Integral membrane protein

Gene: bll7322: Integral membrane protein
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0386: Integral membrane protein
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_0413: Integral membrane protein
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0959: Integral membrane protein
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2043: Integral membrane protein
Integral membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD