Regulog SAM_alpha - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | SAM_alpha |
| RFAM: | RF00521 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - SAM_alpha
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 2 | 2 |
| Rhizobium sp. NGR234 | 2 | 2 |
| Rhizobium leguminosarum bv. viciae 3841 | 2 | 2 |
| Rhizobium etli CFN 42 | 2 | 2 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 2 | 2 |
| Mesorhizobium sp. BNC1 | 2 | 2 |
| Mesorhizobium loti MAFF303099 | 3 | 2 |
| Brucella melitensis 16M | 1 | 1 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 3 | 2 |
| Bradyrhizobium japonicum USDA 110 | 3 | 2 |
| Bradyrhizobium sp. BTAi1 | 3 | 2 |
| Nitrobacter winogradskyi Nb-255 | 3 | 2 |
| Azorhizobium caulinodans ORS 571 | 1 | 1 |
| Xanthobacter autotrophicus Py2 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| metY |
*
Sinorhizobium meliloti 1021 Site: position = -123 score = 83.24 sequence = AGCTTTATCCCGTGG... Gene: SMc02217: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Rhizobium sp. NGR234 Site: position = -123 score = 83.24 sequence = AGCTTTATCCCGTGG... Gene: NGR_c01560: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -122 score = 80.92 sequence = AGAATTATCCCGTGG... Gene: RL0554: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Rhizobium etli CFN 42 Site: position = -122 score = 80.92 sequence = AGAATTATCCCGTGG... Gene: RHE_CH00522: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -123 score = 80.16 sequence = AAGCTTATCCCGTGG... Gene: Atu0432: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Mesorhizobium sp. BNC1 Site: position = -118 score = 81.75 sequence = TTTATCCCCGTGGTG... Gene: Meso_0098: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Mesorhizobium loti MAFF303099 Site: position = -134 score = 73.86 sequence = GTCGTTATCCCGTGG... Gene: mll5651: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Brucella melitensis 16M Site: position = -160 score = 80.47 sequence = ACCTGTTCCGTGGTG... Gene: BMEI1617: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
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Rhodopseudomonas palustris CGA009 Site: position = -153 score = 86.23 sequence = ACTTATCCCGTGGTG... Gene: RPA4766: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Bradyrhizobium japonicum USDA 110 Site: position = -90 score = 84.74 sequence = TCACTTATCCCGTGG... Gene: bll1105: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Bradyrhizobium sp. BTAi1 Site: position = -157 score = 86.23 sequence = GCACTTATCCCGTGG... Gene: BBta_0768: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Nitrobacter winogradskyi Nb-255 Site: position = -152 score = 86.29 sequence = ATACGTCTCCCGTGG... Gene: Nwi_0139: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Azorhizobium caulinodans ORS 571 Site: position = -131 score = 58.54 sequence = CCCCGGCTCGTGGAG... Gene: AZC_4021: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Xanthobacter autotrophicus Py2 Site: position = -162 score = 64.06 sequence = GCCGCTCACTCGTGG... Gene: Xaut_0471: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
| CRON 2. | ||||||||||||||||
| metA |
*
Sinorhizobium meliloti 1021 Site: position = -72 score = 83.51 sequence = AAATGATCCGTGGTG... Gene: SMc03797: Homoserine O-succinyltransferase (EC 2.3.1.46) |
*
Rhizobium sp. NGR234 Site: position = -138 score = 79.51 sequence = AGCGTTCCTGTGGTG... Gene: NGR_c31610: Homoserine O-succinyltransferase (EC 2.3.1.46) |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -126 score = 78.56 sequence = TTAAGGCCTCCGTGG... Gene: RL4606: Homoserine O-succinyltransferase (EC 2.3.1.46) |
*
Rhizobium etli CFN 42 Site: position = -191 score = 79.24 sequence = AGGCACTCCGTGGTG... Gene: RHE_CH04033: Homoserine O-succinyltransferase (EC 2.3.1.46) |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -159 score = 71.15 sequence = AACGCCTCAGTGGTG... Gene: Atu2718: Homoserine O-succinyltransferase (EC 2.3.1.46) |
*
Mesorhizobium sp. BNC1 Site: position = -132 score = 77.8 sequence = CAGGCGAACCCGTGG... Gene: Meso_3083: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Homoserine O-succinyltransferase (EC 2.3.1.46) |
| CRON 3. | ||||||||||||||||
| metX |
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*
Mesorhizobium loti MAFF303099 Site: position = -182 score = 77.31 sequence = AACAGTTCCGTGGTG... Gene: mlr3538: Homoserine O-acetyltransferase (EC 2.3.1.31) |
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Rhodopseudomonas palustris CGA009 Site: position = -184 score = 80.15 sequence = AACCAGAACTCGTGG... Gene: RPA4437: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Bradyrhizobium japonicum USDA 110 Site: position = -170 score = 79.68 sequence = GCCTGTTCCGTGGTC... Gene: blr1399: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Bradyrhizobium sp. BTAi1 Site: position = -161 score = 80.81 sequence = GCTCGTTCCGTGGTC... Gene: BBta_1186: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Nitrobacter winogradskyi Nb-255 Site: position = -171 score = 81.86 sequence = TCCTGTTCCGTGGTC... Gene: Nwi_0585: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: AZC_0229: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Xaut_1909: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
| metW |
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Gene: mlr3539: Methionine biosynthesis protein MetW |
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Gene: RPA4436: Methionine biosynthesis protein MetW |
Gene: blr1400: Methionine biosynthesis protein MetW |
Gene: BBta_1187: Methionine biosynthesis protein MetW |
Gene: Nwi_0586: Methionine biosynthesis protein MetW |
Gene: AZC_0228: Methionine biosynthesis protein MetW |
Gene: Xaut_1910: Methionine biosynthesis protein MetW |
Methionine biosynthesis protein MetW |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |