Regulog SAM_alpha - Rhizobiales

Properties
Regulator type:	RNA regulatory element
Name:	SAM_alpha
RFAM:	RF00521
Regulation mode:
Biological process:	Methionine biosynthesis
Effector:	S-adenosylmethionine
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Rhizobiales
By RNA motif - SAM_alpha
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	2	2
Rhizobium sp. NGR234	2	2
Rhizobium leguminosarum bv. viciae 3841	2	2
Rhizobium etli CFN 42	2	2
Agrobacterium tumefaciens str. C58 (Cereon)	2	2
Mesorhizobium sp. BNC1	2	2
Mesorhizobium loti MAFF303099	3	2
Brucella melitensis 16M	1	1
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009	3	2
Bradyrhizobium japonicum USDA 110	3	2
Bradyrhizobium sp. BTAi1	3	2
Nitrobacter winogradskyi Nb-255	3	2
Azorhizobium caulinodans ORS 571	1	1
Xanthobacter autotrophicus Py2	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
metY	* Sinorhizobium meliloti 1021 Site: position = -123 score = 83.24 sequence = AGCTTTATCCCGTGG... Gene: SMc02217: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Rhizobium sp. NGR234 Site: position = -123 score = 83.24 sequence = AGCTTTATCCCGTGG... Gene: NGR_c01560: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -122 score = 80.92 sequence = AGAATTATCCCGTGG... Gene: RL0554: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Rhizobium etli CFN 42 Site: position = -122 score = 80.92 sequence = AGAATTATCCCGTGG... Gene: RHE_CH00522: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -123 score = 80.16 sequence = AAGCTTATCCCGTGG... Gene: Atu0432: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Mesorhizobium sp. BNC1 Site: position = -118 score = 81.75 sequence = TTTATCCCCGTGGTG... Gene: Meso_0098: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Mesorhizobium loti MAFF303099 Site: position = -134 score = 73.86 sequence = GTCGTTATCCCGTGG... Gene: mll5651: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Brucella melitensis 16M Site: position = -160 score = 80.47 sequence = ACCTGTTCCGTGGTG... Gene: BMEI1617: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -153 score = 86.23 sequence = ACTTATCCCGTGGTG... Gene: RPA4766: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Bradyrhizobium japonicum USDA 110 Site: position = -90 score = 84.74 sequence = TCACTTATCCCGTGG... Gene: bll1105: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Bradyrhizobium sp. BTAi1 Site: position = -157 score = 86.23 sequence = GCACTTATCCCGTGG... Gene: BBta_0768: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Nitrobacter winogradskyi Nb-255 Site: position = -152 score = 86.29 sequence = ATACGTCTCCCGTGG... Gene: Nwi_0139: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Azorhizobium caulinodans ORS 571 Site: position = -131 score = 58.54 sequence = CCCCGGCTCGTGGAG... Gene: AZC_4021: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Xanthobacter autotrophicus Py2 Site: position = -162 score = 64.06 sequence = GCCGCTCACTCGTGG... Gene: Xaut_0471: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)

CRON 2.
metA	* Sinorhizobium meliloti 1021 Site: position = -72 score = 83.51 sequence = AAATGATCCGTGGTG... Gene: SMc03797: Homoserine O-succinyltransferase (EC 2.3.1.46)	* Rhizobium sp. NGR234 Site: position = -138 score = 79.51 sequence = AGCGTTCCTGTGGTG... Gene: NGR_c31610: Homoserine O-succinyltransferase (EC 2.3.1.46)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -126 score = 78.56 sequence = TTAAGGCCTCCGTGG... Gene: RL4606: Homoserine O-succinyltransferase (EC 2.3.1.46)	* Rhizobium etli CFN 42 Site: position = -191 score = 79.24 sequence = AGGCACTCCGTGGTG... Gene: RHE_CH04033: Homoserine O-succinyltransferase (EC 2.3.1.46)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -159 score = 71.15 sequence = AACGCCTCAGTGGTG... Gene: Atu2718: Homoserine O-succinyltransferase (EC 2.3.1.46)	* Mesorhizobium sp. BNC1 Site: position = -132 score = 77.8 sequence = CAGGCGAACCCGTGG... Gene: Meso_3083: Homoserine O-succinyltransferase (EC 2.3.1.46)	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Homoserine O-succinyltransferase (EC 2.3.1.46)

CRON 3.
metX	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -182 score = 77.31 sequence = AACAGTTCCGTGGTG... Gene: mlr3538: Homoserine O-acetyltransferase (EC 2.3.1.31)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -184 score = 80.15 sequence = AACCAGAACTCGTGG... Gene: RPA4437: Homoserine O-acetyltransferase (EC 2.3.1.31)	* Bradyrhizobium japonicum USDA 110 Site: position = -170 score = 79.68 sequence = GCCTGTTCCGTGGTC... Gene: blr1399: Homoserine O-acetyltransferase (EC 2.3.1.31)	* Bradyrhizobium sp. BTAi1 Site: position = -161 score = 80.81 sequence = GCTCGTTCCGTGGTC... Gene: BBta_1186: Homoserine O-acetyltransferase (EC 2.3.1.31)	* Nitrobacter winogradskyi Nb-255 Site: position = -171 score = 81.86 sequence = TCCTGTTCCGTGGTC... Gene: Nwi_0585: Homoserine O-acetyltransferase (EC 2.3.1.31)	Azorhizobium caulinodans ORS 571 Gene: AZC_0229: Homoserine O-acetyltransferase (EC 2.3.1.31)	Xanthobacter autotrophicus Py2 Gene: Xaut_1909: Homoserine O-acetyltransferase (EC 2.3.1.31)	Homoserine O-acetyltransferase (EC 2.3.1.31)
metW	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr3539: Methionine biosynthesis protein MetW	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA4436: Methionine biosynthesis protein MetW	Bradyrhizobium japonicum USDA 110 Gene: blr1400: Methionine biosynthesis protein MetW	Bradyrhizobium sp. BTAi1 Gene: BBta_1187: Methionine biosynthesis protein MetW	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0586: Methionine biosynthesis protein MetW	Azorhizobium caulinodans ORS 571 Gene: AZC_0228: Methionine biosynthesis protein MetW	Xanthobacter autotrophicus Py2 Gene: Xaut_1910: Methionine biosynthesis protein MetW	Methionine biosynthesis protein MetW

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SAM_alpha - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --