Regulog FMN - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 1 | 1 |
| Rhizobium sp. NGR234 | 1 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 3 | 3 |
| Rhizobium etli CFN 42 | 2 | 2 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 1 | 1 |
| Mesorhizobium sp. BNC1 | ||
| Mesorhizobium loti MAFF303099 | 1 | 1 |
| Brucella melitensis 16M | 1 | 1 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | ||
| Bradyrhizobium japonicum USDA 110 | 1 | 1 |
| Bradyrhizobium sp. BTAi1 | 1 | 1 |
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| ribN |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -238 score = 114.43 sequence = TCTGTTCTCAGGGCG... Gene: RL1692: Riboflavin permease, EamA family |
*
Rhizobium etli CFN 42 Site: position = -299 score = 112.39 sequence = GCTGTTCTCAGGGCG... Gene: RHE_CH01591: Riboflavin permease, EamA family |
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Riboflavin permease, EamA family |
| CRON 2. | ||||||||||||||||
| ribB |
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*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -276 score = 120.14 sequence = AATGTTCTCGGGGCG... Gene: RL2726: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -270 score = 112.56 sequence = GTTGTTCTCAGGGCG... Gene: Atu1895: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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3,4-dihydroxy-2-butanone 4-phosphate synthase |
| CRON 3. | ||||||||||||||||
| ribH2 |
*
Sinorhizobium meliloti 1021 Site: position = -200 score = 106.7 sequence = AGCGTTCTCAGGGCG... Gene: SMc01609: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
*
Rhizobium sp. NGR234 Site: position = -252 score = 97.78 sequence = CGCGTTCTCAGGGCG... Gene: NGR_c21540: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -219 score = 116.8 sequence = GCCGTTCTCAGGGCG... Gene: RL3153: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
*
Rhizobium etli CFN 42 Site: position = -221 score = 117.11 sequence = GCCGTTCTCAGGGCG... Gene: RHE_CH02688: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Mesorhizobium loti MAFF303099 Site: position = -227 score = 121.31 sequence = TTAAAGTTCTCAGGG... Gene: mll7281: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Brucella melitensis 16M Site: position = -241 score = 119.97 sequence = GGCTTGTTCTCGGGG... Gene: BMEII0589: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Bradyrhizobium japonicum USDA 110 Site: position = -252 score = 108.55 sequence = GATAAGTTCTCAGGG... Gene: bll7452: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Bradyrhizobium sp. BTAi1 Site: position = -271 score = 97.58 sequence = CATGTTCTCAGGGCG... Gene: BBta_1745: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |