Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Chlorobiales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Chlorobiales
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroherpeton thalassium ATCC 35110 4 2
Pelodictyon phaeoclathratiforme BU-1 1 1
Chlorobium ferrooxidans DSM 13031
Chlorobium phaeobacteroides DSM 266 1 1
Chlorobium limicola DSM 245 1 1
Prosthecochloris vibrioformis DSM 265 1 1
Pelodictyon luteolum DSM 273 1 1
Chlorobaculum parvum NCIB 8327 1 1
Chlorobium phaeobacteroides BS1 1 1
Prosthecochloris aestuarii DSM 271 5 2
Chlorobium chlorochromatii CaD3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thi4
 
Chloroherpeton thalassium ATCC 35110
 
Pelodictyon phaeoclathratiforme BU-1
 
Chlorobium ferrooxidans DSM 13031
 
Chlorobium phaeobacteroides DSM 266
 
Chlorobium limicola DSM 245
 
Prosthecochloris vibrioformis DSM 265
 
Pelodictyon luteolum DSM 273
 
Chlorobaculum parvum NCIB 8327
 
Chlorobium phaeobacteroides BS1
*
Prosthecochloris aestuarii DSM 271

Site:
position = -171
score = 60.7
sequence = ATGTTTCACCTTGGG...

Gene: Paes_1007: Thiazole synthase Thi4
 
Chlorobium chlorochromatii CaD3
Thiazole synthase Thi4
thiE2
 
Chloroherpeton thalassium ATCC 35110

Gene: Ctha_2043: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_1499: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1380: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_1531: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium limicola DSM 245

Gene: Clim_1405: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_0942: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Pelodictyon luteolum DSM 273

Gene: Plut_0959: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_1117: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_1283: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_1006: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0815: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiE1
 
Chloroherpeton thalassium ATCC 35110

Gene: Ctha_2042: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_1500: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1379: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_1532: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium limicola DSM 245

Gene: Clim_1406: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_0943: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Pelodictyon luteolum DSM 273

Gene: Plut_0958: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_1118: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_1282: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_1005: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0816: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD
 
Chloroherpeton thalassium ATCC 35110

Gene: Ctha_2041: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_1501: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1378: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_1533: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chlorobium limicola DSM 245

Gene: Clim_1407: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_0944: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Pelodictyon luteolum DSM 273

Gene: Plut_0957: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_1119: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_1281: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Prosthecochloris aestuarii DSM 271

Gene: Paes_1004: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0817: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
CRON 2.
thiC
*
Chloroherpeton thalassium ATCC 35110

Site:
position = -566
score = 54.62
sequence = CAGATTTCATCCGGG...

Gene: Ctha_2401: Thiamin biosynthesis protein ThiC
*
Pelodictyon phaeoclathratiforme BU-1

Site:
position = -189
score = 52.25
sequence = TCACATCTTGGGGGT...

Gene: Ppha_1778: Thiamin biosynthesis protein ThiC
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_1095: Thiamin biosynthesis protein ThiC
*
Chlorobium phaeobacteroides DSM 266

Site:
position = -179
score = 56.98
sequence = TATCATCTTGGGGGT...

Gene: Cpha266_1851: Thiamin biosynthesis protein ThiC
*
Chlorobium limicola DSM 245

Site:
position = -190
score = 56.94
sequence = AATCATCTTGGGGGT...

Gene: Clim_1669: Thiamin biosynthesis protein ThiC
*
Prosthecochloris vibrioformis DSM 265

Site:
position = -177
score = 62.77
sequence = TCACATCTTGGGGGT...

Gene: Cvib_1273: Thiamin biosynthesis protein ThiC
*
Pelodictyon luteolum DSM 273

Site:
position = -170
score = 63.73
sequence = ACTCATCTTGGGGGT...

Gene: Plut_1463: Thiamin biosynthesis protein ThiC
*
Chlorobaculum parvum NCIB 8327

Site:
position = -178
score = 61.83
sequence = AATCATCTTGGGGGT...

Gene: Cpar_1540: Thiamin biosynthesis protein ThiC
*
Chlorobium phaeobacteroides BS1

Site:
position = -177
score = 50.5
sequence = CAAATCATCTTAGGG...

Gene: Cphamn1_0909: Thiamin biosynthesis protein ThiC
*
Prosthecochloris aestuarii DSM 271

Site:
position = -172
score = 65.82
sequence = AATCATCTTAGGGGT...

Gene: Paes_1561: Thiamin biosynthesis protein ThiC
 
Chlorobium chlorochromatii CaD3

Gene: Cag_0382: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
 
CRON 3.
thiO
*
Chloroherpeton thalassium ATCC 35110

Site:
position = -230
score = 51.18
sequence = CAAATTCCGTTAGGG...

Gene: Ctha_2048: Glycine oxidase ThiO (EC 1.4.3.19)
 
Pelodictyon phaeoclathratiforme BU-1
 
Chlorobium ferrooxidans DSM 13031
 
Chlorobium phaeobacteroides DSM 266
 
Chlorobium limicola DSM 245
 
Prosthecochloris vibrioformis DSM 265
 
Pelodictyon luteolum DSM 273
 
Chlorobaculum parvum NCIB 8327
 
Chlorobium phaeobacteroides BS1
 
Prosthecochloris aestuarii DSM 271
 
Chlorobium chlorochromatii CaD3
Glycine oxidase ThiO (EC 1.4.3.19)
thiS
 
Chloroherpeton thalassium ATCC 35110

Gene: Ctha_2047: Sulfur carrier protein ThiS
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2002: Sulfur carrier protein ThiS
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_2146: Sulfur carrier protein ThiS
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0731: Sulfur carrier protein ThiS
 
Chlorobium limicola DSM 245

Gene: Clim_0666: Sulfur carrier protein ThiS
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1359: Sulfur carrier protein ThiS
 
Pelodictyon luteolum DSM 273

Gene: Plut_1564: Sulfur carrier protein ThiS
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_0671: Sulfur carrier protein ThiS
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_1555: Sulfur carrier protein ThiS
 
Prosthecochloris aestuarii DSM 271
 
Chlorobium chlorochromatii CaD3

Gene: Cag_1266: Sulfur carrier protein ThiS
Sulfur carrier protein ThiS
thiG
 
Chloroherpeton thalassium ATCC 35110

Gene: Ctha_2046: Thiazole synthase
 
Pelodictyon phaeoclathratiforme BU-1

Gene: Ppha_2003: Thiazole synthase
 
Chlorobium ferrooxidans DSM 13031

Gene: CferDRAFT_2147: Thiazole synthase
 
Chlorobium phaeobacteroides DSM 266

Gene: Cpha266_0730: Thiazole synthase
 
Chlorobium limicola DSM 245

Gene: Clim_0665: Thiazole synthase
 
Prosthecochloris vibrioformis DSM 265

Gene: Cvib_1360: Thiazole synthase
 
Pelodictyon luteolum DSM 273

Gene: Plut_1565: Thiazole synthase
 
Chlorobaculum parvum NCIB 8327

Gene: Cpar_0670: Thiazole synthase
 
Chlorobium phaeobacteroides BS1

Gene: Cphamn1_1556: Thiazole synthase
 
Prosthecochloris aestuarii DSM 271
 
Chlorobium chlorochromatii CaD3

Gene: Cag_1267: Thiazole synthase
Thiazole synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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