Regulog TPP - Chlorobiales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Chlorobiales

Member of regulog collections

By taxonomy - Chlorobiales
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Chloroherpeton thalassium ATCC 35110	4	2
Pelodictyon phaeoclathratiforme BU-1	1	1
Chlorobium ferrooxidans DSM 13031
Chlorobium phaeobacteroides DSM 266	1	1
Chlorobium limicola DSM 245	1	1
Prosthecochloris vibrioformis DSM 265	1	1
Pelodictyon luteolum DSM 273	1	1
Chlorobaculum parvum NCIB 8327	1	1
Chlorobium phaeobacteroides BS1	1	1
Prosthecochloris aestuarii DSM 271	5	2
Chlorobium chlorochromatii CaD3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
thi4	Chloroherpeton thalassium ATCC 35110	Pelodictyon phaeoclathratiforme BU-1	Chlorobium ferrooxidans DSM 13031	Chlorobium phaeobacteroides DSM 266	Chlorobium limicola DSM 245	Prosthecochloris vibrioformis DSM 265	Pelodictyon luteolum DSM 273	Chlorobaculum parvum NCIB 8327	Chlorobium phaeobacteroides BS1	* Prosthecochloris aestuarii DSM 271 Site: position = -171 score = 60.7 sequence = ATGTTTCACCTTGGG... Gene: Paes_1007: Thiazole synthase Thi4	Chlorobium chlorochromatii CaD3	Thiazole synthase Thi4
thiE2	Chloroherpeton thalassium ATCC 35110 Gene: Ctha_2043: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_1499: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1380: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_1531: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium limicola DSM 245 Gene: Clim_1405: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_0942: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Pelodictyon luteolum DSM 273 Gene: Plut_0959: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobaculum parvum NCIB 8327 Gene: Cpar_1117: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1283: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Prosthecochloris aestuarii DSM 271 Gene: Paes_1006: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium chlorochromatii CaD3 Gene: Cag_0815: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiE1	Chloroherpeton thalassium ATCC 35110 Gene: Ctha_2042: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_1500: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1379: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_1532: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium limicola DSM 245 Gene: Clim_1406: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_0943: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Pelodictyon luteolum DSM 273 Gene: Plut_0958: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobaculum parvum NCIB 8327 Gene: Cpar_1118: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1282: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Prosthecochloris aestuarii DSM 271 Gene: Paes_1005: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Chlorobium chlorochromatii CaD3 Gene: Cag_0816: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD	Chloroherpeton thalassium ATCC 35110 Gene: Ctha_2041: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_1501: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1378: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_1533: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Chlorobium limicola DSM 245 Gene: Clim_1407: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_0944: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Pelodictyon luteolum DSM 273 Gene: Plut_0957: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Chlorobaculum parvum NCIB 8327 Gene: Cpar_1119: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1281: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Prosthecochloris aestuarii DSM 271 Gene: Paes_1004: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Chlorobium chlorochromatii CaD3 Gene: Cag_0817: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Phosphomethylpyrimidine kinase (EC 2.7.4.7)

CRON 2.
thiC	* Chloroherpeton thalassium ATCC 35110 Site: position = -566 score = 54.62 sequence = CAGATTTCATCCGGG... Gene: Ctha_2401: Thiamin biosynthesis protein ThiC	* Pelodictyon phaeoclathratiforme BU-1 Site: position = -189 score = 52.25 sequence = TCACATCTTGGGGGT... Gene: Ppha_1778: Thiamin biosynthesis protein ThiC	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_1095: Thiamin biosynthesis protein ThiC	* Chlorobium phaeobacteroides DSM 266 Site: position = -179 score = 56.98 sequence = TATCATCTTGGGGGT... Gene: Cpha266_1851: Thiamin biosynthesis protein ThiC	* Chlorobium limicola DSM 245 Site: position = -190 score = 56.94 sequence = AATCATCTTGGGGGT... Gene: Clim_1669: Thiamin biosynthesis protein ThiC	* Prosthecochloris vibrioformis DSM 265 Site: position = -177 score = 62.77 sequence = TCACATCTTGGGGGT... Gene: Cvib_1273: Thiamin biosynthesis protein ThiC	* Pelodictyon luteolum DSM 273 Site: position = -170 score = 63.73 sequence = ACTCATCTTGGGGGT... Gene: Plut_1463: Thiamin biosynthesis protein ThiC	* Chlorobaculum parvum NCIB 8327 Site: position = -178 score = 61.83 sequence = AATCATCTTGGGGGT... Gene: Cpar_1540: Thiamin biosynthesis protein ThiC	* Chlorobium phaeobacteroides BS1 Site: position = -177 score = 50.5 sequence = CAAATCATCTTAGGG... Gene: Cphamn1_0909: Thiamin biosynthesis protein ThiC	* Prosthecochloris aestuarii DSM 271 Site: position = -172 score = 65.82 sequence = AATCATCTTAGGGGT... Gene: Paes_1561: Thiamin biosynthesis protein ThiC	Chlorobium chlorochromatii CaD3 Gene: Cag_0382: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC

CRON 3.
thiO	* Chloroherpeton thalassium ATCC 35110 Site: position = -230 score = 51.18 sequence = CAAATTCCGTTAGGG... Gene: Ctha_2048: Glycine oxidase ThiO (EC 1.4.3.19)	Pelodictyon phaeoclathratiforme BU-1	Chlorobium ferrooxidans DSM 13031	Chlorobium phaeobacteroides DSM 266	Chlorobium limicola DSM 245	Prosthecochloris vibrioformis DSM 265	Pelodictyon luteolum DSM 273	Chlorobaculum parvum NCIB 8327	Chlorobium phaeobacteroides BS1	Prosthecochloris aestuarii DSM 271	Chlorobium chlorochromatii CaD3	Glycine oxidase ThiO (EC 1.4.3.19)
thiS	Chloroherpeton thalassium ATCC 35110 Gene: Ctha_2047: Sulfur carrier protein ThiS	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2002: Sulfur carrier protein ThiS	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_2146: Sulfur carrier protein ThiS	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0731: Sulfur carrier protein ThiS	Chlorobium limicola DSM 245 Gene: Clim_0666: Sulfur carrier protein ThiS	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1359: Sulfur carrier protein ThiS	Pelodictyon luteolum DSM 273 Gene: Plut_1564: Sulfur carrier protein ThiS	Chlorobaculum parvum NCIB 8327 Gene: Cpar_0671: Sulfur carrier protein ThiS	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1555: Sulfur carrier protein ThiS	Prosthecochloris aestuarii DSM 271	Chlorobium chlorochromatii CaD3 Gene: Cag_1266: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiG	Chloroherpeton thalassium ATCC 35110 Gene: Ctha_2046: Thiazole synthase	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_2003: Thiazole synthase	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_2147: Thiazole synthase	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0730: Thiazole synthase	Chlorobium limicola DSM 245 Gene: Clim_0665: Thiazole synthase	Prosthecochloris vibrioformis DSM 265 Gene: Cvib_1360: Thiazole synthase	Pelodictyon luteolum DSM 273 Gene: Plut_1565: Thiazole synthase	Chlorobaculum parvum NCIB 8327 Gene: Cpar_0670: Thiazole synthase	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1556: Thiazole synthase	Prosthecochloris aestuarii DSM 271	Chlorobium chlorochromatii CaD3 Gene: Cag_1267: Thiazole synthase	Thiazole synthase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Chlorobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --