Regulog SAM - Chlorobiales
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Chlorobiales |
Member of regulog collections
- By taxonomy - Chlorobiales
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroherpeton thalassium ATCC 35110 | 2 | 1 |
| Pelodictyon phaeoclathratiforme BU-1 | 3 | 2 |
| Chlorobium ferrooxidans DSM 13031 | 3 | 2 |
| Chlorobium phaeobacteroides DSM 266 | 2 | 1 |
| Chlorobium limicola DSM 245 | 2 | 1 |
| Prosthecochloris vibrioformis DSM 265 | 2 | 1 |
| Pelodictyon luteolum DSM 273 | 3 | 2 |
| Chlorobaculum parvum NCIB 8327 | 2 | 1 |
| Chlorobium phaeobacteroides BS1 | 2 | 1 |
| Prosthecochloris aestuarii DSM 271 | 2 | 1 |
| Chlorobium chlorochromatii CaD3 | 1 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metI |
|
*
Pelodictyon phaeoclathratiforme BU-1 Site: position = -101 score = 28.18 sequence = CATCATCAAAAAAGG... Gene: Ppha_2110: Cystathionine gamma-lyase (EC 4.4.1.1) |
*
Chlorobium ferrooxidans DSM 13031 Site: position = -134 score = 36.01 sequence = GGTCATCAAGAAAGG... Gene: CferDRAFT_0404: Cystathionine gamma-lyase (EC 4.4.1.1) |
|
|
|
*
Pelodictyon luteolum DSM 273 Site: position = -293 score = 49.25 sequence = ACAGTCATCAAGAAA... Gene: Plut_1548: Cystathionine gamma-lyase (EC 4.4.1.1) |
|
|
|
|
Cystathionine gamma-lyase (EC 4.4.1.1) |
| CRON 2. | ||||||||||||
| metY |
*
Chloroherpeton thalassium ATCC 35110 Site: position = -307 score = 75.58 sequence = TGTCATCAAGAAAGG... Gene: Ctha_1280: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Pelodictyon phaeoclathratiforme BU-1 Site: position = -231 score = 78.97 sequence = TATCATCCAGAAAGG... Gene: Ppha_0929: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Chlorobium ferrooxidans DSM 13031 Site: position = -113 score = 82.73 sequence = GCTATCATCGAGAAA... Gene: CferDRAFT_1079: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Chlorobium phaeobacteroides DSM 266 Site: position = -222 score = 78.89 sequence = GCTGTCATCGAGAAA... Gene: Cpha266_1767: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Chlorobium limicola DSM 245 Site: position = -226 score = 76.95 sequence = GCTATCATCGAGAAA... Gene: Clim_1825: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Prosthecochloris vibrioformis DSM 265 Site: position = -168 score = 73.24 sequence = GCTATCATCGAGAAA... Gene: Cvib_1184: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Pelodictyon luteolum DSM 273 Site: position = -234 score = 67.51 sequence = TATCATCGAGAAAGG... Gene: Plut_0592: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Chlorobaculum parvum NCIB 8327 Site: position = -214 score = 84.68 sequence = TATCATCCAGAAAGG... Gene: Cpar_0621: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Chlorobium phaeobacteroides BS1 Site: position = -98 score = 73.08 sequence = TATCATCCAGAAAGG... Gene: Cphamn1_0819: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Prosthecochloris aestuarii DSM 271 Site: position = -220 score = 70.18 sequence = TGTCATCCAGAAAGG... Gene: Paes_0729: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
|
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
| metX |
Gene: Ctha_1281: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Ppha_0930: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: CferDRAFT_1078: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Cpha266_1766: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Clim_1824: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Cvib_1183: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Plut_0593: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Cpar_0622: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Cphamn1_0820: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Paes_0730: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Chlorobium chlorochromatii CaD3 Site: position = -267 score = 72.75 sequence = TATCATCCAGAAAGG... Gene: Cag_1206: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |