Regulog RhaR - Chloroflexia
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Chloroflexi |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Chloroflexi
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus sp. Y-400-fl | 9 | 1 |
| Chloroflexus aggregans DSM 9485 | 9 | 1 |
| Roseiflexus castenholzii DSM 13941 | 5 | 1 |
| Roseiflexus sp. RS-1 | 8 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| rhaR |
*
Chloroflexus sp. Y-400-fl Site: position = -71 score = 6.65008 sequence = TTGACA-(4)-TTGAAA Site: position = -81 score = 6.50717 sequence = TCGTAA-(4)-TTGACA Site: position = -91 score = 6.79033 sequence = TCGTAA-(4)-TCGTAA Gene: Chy400_2467: Transcriptional regulator of rhamnose utilization, DeoR family |
*
Chloroflexus aggregans DSM 9485 Site: position = -140 score = 7.21639 sequence = TCGTAA-(4)-TCGAAA Site: position = -130 score = 6.93323 sequence = TCGAAA-(4)-TTGACA Site: position = -120 score = 6.65008 sequence = TTGACA-(4)-TTGAAA Gene: Cagg_3309: Transcriptional regulator of rhamnose utilization, DeoR family |
*
Roseiflexus castenholzii DSM 13941 Site: position = -58 score = 6.93323 sequence = TTGACA-(4)-TCGAAA Site: position = -68 score = 6.31209 sequence = CCGAAA-(4)-TTGACA Site: position = -78 score = 7.02131 sequence = TCGAAA-(4)-CCGAAA Gene: Rcas_3457: Transcriptional regulator of rhamnose utilization, DeoR family |
*
Roseiflexus sp. RS-1 Site: position = -74 score = 6.93323 sequence = TTGACA-(4)-TCGAAA Site: position = -94 score = 7.64245 sequence = TCGAAA-(4)-TCGAAA Site: position = -84 score = 6.93323 sequence = TCGAAA-(4)-TTGACA Gene: RoseRS_2724: Transcriptional regulator of rhamnose utilization, DeoR family |
|
Transcriptional regulator of rhamnose utilization, DeoR family |
| rhaG |
Gene: Chy400_2466: L-rhamnose ABC transporter, duplicated ATP-binding component |
Gene: Cagg_3310: L-rhamnose ABC transporter, duplicated ATP-binding component |
|
Gene: RoseRS_2725: L-rhamnose ABC transporter, duplicated ATP-binding component |
|
L-rhamnose ABC transporter, duplicated ATP-binding component |
| rhaH |
Gene: Chy400_2465: L-rhamnose ABC transporter, permease component 1 |
Gene: Cagg_3311: L-rhamnose ABC transporter, permease component 1 |
|
Gene: RoseRS_2726: L-rhamnose ABC transporter, permease component 1 |
|
L-rhamnose ABC transporter, permease component 1 |
| rhaJ |
Gene: Chy400_2464: L-rhamnose ABC transporter, permease component 2 |
Gene: Cagg_3312: L-rhamnose ABC transporter, permease component 2 |
|
Gene: RoseRS_2727: L-rhamnose ABC transporter, permease component 2 |
|
L-rhamnose ABC transporter, permease component 2 |
| rhaF |
Gene: Chy400_2463: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein |
Gene: Cagg_3313: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein |
|
|
|
L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein |
| rhaM |
Gene: Chy400_2462: L-rhamnose mutarotase |
Gene: Cagg_3314: L-rhamnose mutarotase |
Gene: Rcas_3456: L-rhamnose mutarotase |
Gene: RoseRS_2729: L-rhamnose mutarotase |
|
L-rhamnose mutarotase |
| rhaA |
Gene: Chy400_2461: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: Cagg_3315: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: Rcas_3455: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: RoseRS_2730: L-rhamnose isomerase (EC 5.3.1.14) |
|
L-rhamnose isomerase (EC 5.3.1.14) |
| rhaEW |
Gene: Chy400_2460: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
Gene: Cagg_3316: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
Gene: Rcas_3454: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
Gene: RoseRS_2731: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
|
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
| rhaB |
Gene: Chy400_2459: Rhamnulokinase (EC 2.7.1.5) |
Gene: Cagg_3317: Rhamnulokinase (EC 2.7.1.5) |
Gene: Rcas_3453: Rhamnulokinase (EC 2.7.1.5) |
Gene: RoseRS_2732: Rhamnulokinase (EC 2.7.1.5) |
|
Rhamnulokinase (EC 2.7.1.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |