Regulog T-box(Trp) - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Trp-tRNA |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - T-box
- By effector - Trp-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 1 | 1 |
| Chloroflexus sp. Y-400-fl | 1 | 1 |
| Roseiflexus castenholzii DSM 13941 | 1 | 1 |
| Roseiflexus sp. RS-1 | 1 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 | 1 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| trpS |
Gene: Cagg_2121: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
Gene: Chy400_1530: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
|
|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -291 score = 107.24 sequence = AAACAACGTTGACGC... Gene: Haur_0220: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
| CRON 2. | ||||||
| trpB |
*
Chloroflexus aggregans DSM 9485 Site: position = -327 score = 77.41 sequence = ATAACCGACGTTGAT... Gene: Cagg_2123: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Chloroflexus sp. Y-400-fl Site: position = -320 score = 77.56 sequence = ATAACCGACGTTGAT... Gene: Chy400_1532: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -396 score = 32.41 sequence = ATTAACAGCGATGAA... Gene: Rcas_2159: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Roseiflexus sp. RS-1 Site: position = -394 score = 57.39 sequence = GTTAACGACTGTGAA... Gene: RoseRS_1459: Tryptophan synthase beta chain like (EC 4.2.1.20) |
|
Tryptophan synthase beta chain like (EC 4.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |