Regulog T-box(Thr) - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Thr-tRNA |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - T-box
- By effector - Thr-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | ||
| Chloroflexus sp. Y-400-fl | 2 | 1 |
| Roseiflexus castenholzii DSM 13941 | 2 | 1 |
| Roseiflexus sp. RS-1 | 2 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 | 3 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| Cagg_2512 |
Gene: Cagg_2512: hypothetical protein |
*
Chloroflexus sp. Y-400-fl Site: position = -288 score = 68.46 sequence = TCGCAAAGCGCTGAC... Gene: Chy400_1309: hypothetical protein |
*
Roseiflexus castenholzii DSM 13941 Site: position = -278 score = 79.91 sequence = AGACTGTGCGTTGAC... Gene: Rcas_0350: hypothetical protein |
*
Roseiflexus sp. RS-1 Site: position = -288 score = 80.93 sequence = TCCGTTTGCGTTGAC... Gene: RoseRS_0111: hypothetical protein |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -287 score = 58.54 sequence = TAACCCAACTGTGAT... Gene: Haur_2852: hypothetical protein |
hypothetical protein |
| Haur_2851 |
|
|
|
|
Gene: Haur_2851: hypothetical protein |
hypothetical protein |
| thrS |
Gene: Cagg_2511: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Gene: Chy400_1308: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Gene: Rcas_0349: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Gene: RoseRS_0110: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Gene: Haur_2850: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Threonyl-tRNA synthetase (EC 6.1.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |