Regulog T-box(Ser) - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ser-tRNA |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - T-box
- By effector - Ser-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | ||
| Chloroflexus sp. Y-400-fl | ||
| Roseiflexus castenholzii DSM 13941 | 3 | 1 |
| Roseiflexus sp. RS-1 | ||
| Herpetosiphon aurantiacus ATCC 23779 | 4 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| Haur_4345 |
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*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -274 score = 65.09 sequence = GCCACTGATGTTGAC... Gene: Haur_4345: hypothetical protein |
hypothetical protein |
| Haur_4344 |
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Gene: Haur_4344: hypothetical protein |
hypothetical protein |
| Haur_4343 |
|
|
|
|
Gene: Haur_4343: hypothetical protein |
hypothetical protein |
| serS |
Gene: Cagg_1426: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: Chy400_0475: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: Rcas_1494: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: RoseRS_3466: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: Haur_4342: Seryl-tRNA synthetase (EC 6.1.1.11) |
Seryl-tRNA synthetase (EC 6.1.1.11) |
| Cagg_1428 |
Gene: Cagg_1428: NUDIX hydrolase |
Gene: Chy400_0477: NUDIX hydrolase |
*
Roseiflexus castenholzii DSM 13941 Site: position = -392 score = 68.76 sequence = GCCAATGACGGTGAC... Gene: Rcas_1496: NUDIX hydrolase |
Gene: RoseRS_3464: NUDIX hydrolase |
Gene: Haur_0149: NUDIX hydrolase |
NUDIX hydrolase |
| mutT |
Gene: Cagg_1427: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) |
Gene: Chy400_0476: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) |
Gene: Rcas_1495: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) |
Gene: RoseRS_3465: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) |
|
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |