Regulog T-box(Phe) - Chloroflexia

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Phe-tRNA
Phylum:	Chloroflexi

Member of regulog collections

By taxonomy - Chloroflexi
By RNA motif - T-box
By effector - Phe-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl
Roseiflexus castenholzii DSM 13941	3	1
Roseiflexus sp. RS-1	3	1
Herpetosiphon aurantiacus ATCC 23779

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
pheS	Chloroflexus aggregans DSM 9485 Gene: Cagg_3159: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Chloroflexus sp. Y-400-fl	* Roseiflexus castenholzii DSM 13941 Site: position = -297 score = 62.49 sequence = CGCAGGCTATGACGA... Gene: Rcas_1438: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Roseiflexus sp. RS-1 Site: position = -296 score = 63.85 sequence = ACAGGGCTGTGACGA... Gene: RoseRS_1036: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_3836: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
PF02366	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1439: hypothetical protein	Roseiflexus sp. RS-1 Gene: RoseRS_1037: hypothetical protein	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_3837: hypothetical protein	hypothetical protein
pheT	Chloroflexus aggregans DSM 9485 Gene: Cagg_2462: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Chloroflexus sp. Y-400-fl Gene: Chy400_0956: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1440: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Roseiflexus sp. RS-1 Gene: RoseRS_1038: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4633: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Phe) - Chloroflexia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --