Regulog T-box(Phe) - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Phe-tRNA |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - T-box
- By effector - Phe-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | ||
| Chloroflexus sp. Y-400-fl | ||
| Roseiflexus castenholzii DSM 13941 | 3 | 1 |
| Roseiflexus sp. RS-1 | 3 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| pheS |
Gene: Cagg_3159: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
|
*
Roseiflexus castenholzii DSM 13941 Site: position = -297 score = 62.49 sequence = CGCAGGCTATGACGA... Gene: Rcas_1438: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Roseiflexus sp. RS-1 Site: position = -296 score = 63.85 sequence = ACAGGGCTGTGACGA... Gene: RoseRS_1036: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
Gene: Haur_3836: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
| PF02366 |
|
|
Gene: Rcas_1439: hypothetical protein |
Gene: RoseRS_1037: hypothetical protein |
Gene: Haur_3837: hypothetical protein |
hypothetical protein |
| pheT |
Gene: Cagg_2462: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: Chy400_0956: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: Rcas_1440: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: RoseRS_1038: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: Haur_4633: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |