Regulog T-box(Gly) - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Gly-tRNA |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - T-box
- By effector - Gly-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 1 | 1 |
| Chloroflexus sp. Y-400-fl | 1 | 1 |
| Roseiflexus castenholzii DSM 13941 | 1 | 1 |
| Roseiflexus sp. RS-1 | 1 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 | 1 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| glyS |
*
Chloroflexus aggregans DSM 9485 Site: position = -215 score = 28.41 sequence = CGATGAACCGGAGGA... Gene: Cagg_1451: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Chloroflexus sp. Y-400-fl Site: position = -227 score = 24.56 sequence = CATCGGCGATGATCC... Gene: Chy400_2682: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -236 score = 37.29 sequence = GAACGCGGCGTGGAA... Gene: Rcas_0046: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Roseiflexus sp. RS-1 Site: position = -241 score = 57.25 sequence = ACGTGTGGCGTTGAA... Gene: RoseRS_0862: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -346 score = 86.75 sequence = TCTTGGTGATGAACC... Gene: Haur_4697: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Glycyl-tRNA synthetase (EC 6.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |