Regulog SAM - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 12 | 3 |
| Chloroflexus sp. Y-400-fl | 12 | 3 |
| Roseiflexus castenholzii DSM 13941 | 3 | 2 |
| Roseiflexus sp. RS-1 | 3 | 2 |
| Herpetosiphon aurantiacus ATCC 23779 | 13 | 4 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| cysH |
|
|
Gene: Rcas_0330: Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) |
Gene: RoseRS_0739: Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -181 score = 73.4 sequence = GCACTCATCCAGAGG... Gene: Haur_1749: Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) |
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) |
| sat-cysC |
Gene: Cagg_1550: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: Chy400_2278: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: Rcas_4308: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: RoseRS_3336: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: Haur_1748: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) |
| cysC |
|
|
|
|
Gene: Haur_1747: Adenylylsulfate kinase (EC 2.7.1.25) |
Adenylylsulfate kinase (EC 2.7.1.25) |
| cysI |
|
|
|
|
Gene: Haur_1746: Ferredoxin--sulfite reductase, bacillial type (EC 1.8.7.1) |
Ferredoxin--sulfite reductase, bacillial type (EC 1.8.7.1) |
| CRON 2. | ||||||
| metI |
*
Chloroflexus aggregans DSM 9485 Site: position = -181 score = 69.53 sequence = GCACTCATCCAGAGC... Gene: Cagg_1948: Cystathionine gamma-synthase (EC 2.5.1.48) |
*
Chloroflexus sp. Y-400-fl Site: position = -182 score = 67.5 sequence = GCACTCATCCAGAGC... Gene: Chy400_1581: Cystathionine gamma-synthase (EC 2.5.1.48) |
|
|
|
Cystathionine gamma-synthase (EC 2.5.1.48) |
| metF |
Gene: Cagg_1947: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Chy400_1580: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Rcas_3006: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: RoseRS_2032: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
|
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| map |
Gene: Cagg_1946: Methionine aminopeptidase (EC 3.4.11.18) |
Gene: Chy400_1579: Methionine aminopeptidase (EC 3.4.11.18) |
Gene: Rcas_1086: Methionine aminopeptidase (EC 3.4.11.18) |
Gene: RoseRS_3795: Methionine aminopeptidase (EC 3.4.11.18) |
2
Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_1134: Methionine aminopeptidase (EC 3.4.11.18) Gene: Haur_1133: Methionine aminopeptidase (EC 3.4.11.18) |
Methionine aminopeptidase (EC 3.4.11.18) |
| Cagg_1945 |
Gene: Cagg_1945: hypothetical protein |
Gene: Chy400_1578: hypothetical protein |
|
|
|
hypothetical protein |
| CRON 3. | ||||||
| metH |
Gene: Cagg_0032: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Chy400_4231: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -237 score = 57.35 sequence = GCTCATCCAGAGGAG... Gene: Rcas_3878: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Roseiflexus sp. RS-1 Site: position = -151 score = 62.39 sequence = GCTCATCCAGAGGAG... Gene: RoseRS_0064: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -203 score = 68.94 sequence = CCTCATCACGAGGAG... Gene: Haur_2544: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| CRON 4. | ||||||
| mtnA |
*
Chloroflexus aggregans DSM 9485 Site: position = -135 score = 84.38 sequence = GCTCATCGAGATGGG... Gene: Cagg_3560: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
*
Chloroflexus sp. Y-400-fl Site: position = -166 score = 84.11 sequence = ATGCTCATCGAGATG... Gene: Chy400_3271: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
Gene: Rcas_0156: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
Gene: RoseRS_0485: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -137 score = 88.24 sequence = TCTCATCGAGATGGG... Gene: Haur_2349: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
| Cagg_3561 |
Gene: Cagg_3561: hypothetical protein |
Gene: Chy400_3270: hypothetical protein |
Gene: Rcas_0157: hypothetical protein |
Gene: RoseRS_0486: hypothetical protein |
Gene: Haur_2350: hypothetical protein |
hypothetical protein |
| adk |
Gene: Cagg_3562: putative Adenosine kinase (EC 2.7.1.20) |
Gene: Chy400_3269: putative Adenosine kinase (EC 2.7.1.20) |
Gene: Rcas_0158: putative Adenosine kinase (EC 2.7.1.20) |
Gene: RoseRS_0487: putative Adenosine kinase (EC 2.7.1.20) |
Gene: Haur_2351: putative Adenosine kinase (EC 2.7.1.20) |
putative Adenosine kinase (EC 2.7.1.20) |
| Cagg_3563 |
Gene: Cagg_3563: oxidoreductase domain protein |
Gene: Chy400_3268: oxidoreductase domain protein |
|
|
|
oxidoreductase domain protein |
| ahcY |
Gene: Cagg_3564: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Chy400_3267: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Rcas_0159: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: RoseRS_0488: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Haur_2352: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| metK |
Gene: Cagg_3565: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Chy400_3266: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Rcas_0160: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: RoseRS_0489: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Haur_2353: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| CRON 5. | ||||||
| metY |
*
Chloroflexus aggregans DSM 9485 Site: position = -215 score = 82.38 sequence = GCACTCATCCAGAGC... Gene: Cagg_0970: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Chloroflexus sp. Y-400-fl Site: position = -212 score = 80.03 sequence = ACTCATCCAGAGCGG... Gene: Chy400_3740: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -403 score = 46.66 sequence = ACTCTTATCCAGAGA... Gene: Rcas_2040: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Roseiflexus sp. RS-1 Site: position = -411 score = 42.47 sequence = TCTTATCCAGAGAGG... Gene: RoseRS_1758: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -256 score = 73.98 sequence = ACTCATCCAGAGGGG... Gene: Haur_0927: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
| Haur_0928 |
|
|
|
|
Gene: Haur_0928: hypothetical protein |
hypothetical protein |
| metX |
Gene: Cagg_0969: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Chy400_3741: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Rcas_2039: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: RoseRS_1759: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Haur_0929: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |