Regulog Glycine - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | ||
| Chloroflexus sp. Y-400-fl | ||
| Roseiflexus castenholzii DSM 13941 | 5 | 1 |
| Roseiflexus sp. RS-1 | 5 | 1 |
| Herpetosiphon aurantiacus ATCC 23779 | 5 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| gcvT |
Gene: Cagg_0253: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Chy400_3767: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -137 score = 43.97 sequence = CCGACGACCCTCTGG... Site: position = -235 score = 50.09 sequence = GATGACGGGCGTGGG... Gene: Rcas_2285: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Roseiflexus sp. RS-1 Site: position = -236 score = 52.51 sequence = GACGACGGGCGTGGG... Site: position = -138 score = 53.28 sequence = CTGACGACCCTCTGG... Gene: RoseRS_1526: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Haur_2868: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
Gene: Cagg_0252: Glycine cleavage system H protein |
Gene: Chy400_3768: Glycine cleavage system H protein |
Gene: Rcas_2284: Glycine cleavage system H protein |
Gene: RoseRS_1525: Glycine cleavage system H protein |
Gene: Haur_2869: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| gcvP1 |
Gene: Cagg_0251: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: Chy400_3769: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: Rcas_2283: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: RoseRS_1524: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: Haur_2870: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
| PF01636 |
Gene: Cagg_0250: aminoglycoside phosphotransferase |
Gene: Chy400_3770: aminoglycoside phosphotransferase |
Gene: Rcas_2282: aminoglycoside phosphotransferase |
Gene: RoseRS_1523: aminoglycoside phosphotransferase |
|
aminoglycoside phosphotransferase |
| gcvP2 |
Gene: Cagg_0249: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Chy400_3771: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Rcas_2281: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: RoseRS_1522: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Haur_2871: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
| lplA |
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|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -134 score = 59.38 sequence = GACAGCGCTCTGGAG... Site: position = -233 score = 48.92 sequence = TGAAGGACGCGGAAG... Gene: Haur_2867: Lipoate-protein ligase A |
Lipoate-protein ligase A |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |