Regulog Glycine - Chloroflexia

Properties
Regulator type:	RNA regulatory element
Name:	Glycine
RFAM:	RF00504
Regulation mode:
Biological process:	Glycine metabolism
Effector:	Glycine
Phylum:	Chloroflexi

Member of regulog collections

By taxonomy - Chloroflexi
By RNA motif - Glycine
By effector - Glycine
By pathway - Glycine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl
Roseiflexus castenholzii DSM 13941	5	1
Roseiflexus sp. RS-1	5	1
Herpetosiphon aurantiacus ATCC 23779	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
gcvT	Chloroflexus aggregans DSM 9485 Gene: Cagg_0253: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Chloroflexus sp. Y-400-fl Gene: Chy400_3767: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Roseiflexus castenholzii DSM 13941 Site: position = -137 score = 43.97 sequence = CCGACGACCCTCTGG... Site: position = -235 score = 50.09 sequence = GATGACGGGCGTGGG... Gene: Rcas_2285: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Roseiflexus sp. RS-1 Site: position = -236 score = 52.51 sequence = GACGACGGGCGTGGG... Site: position = -138 score = 53.28 sequence = CTGACGACCCTCTGG... Gene: RoseRS_1526: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_2868: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH	Chloroflexus aggregans DSM 9485 Gene: Cagg_0252: Glycine cleavage system H protein	Chloroflexus sp. Y-400-fl Gene: Chy400_3768: Glycine cleavage system H protein	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2284: Glycine cleavage system H protein	Roseiflexus sp. RS-1 Gene: RoseRS_1525: Glycine cleavage system H protein	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_2869: Glycine cleavage system H protein	Glycine cleavage system H protein
gcvP1	Chloroflexus aggregans DSM 9485 Gene: Cagg_0251: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Chloroflexus sp. Y-400-fl Gene: Chy400_3769: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2283: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Roseiflexus sp. RS-1 Gene: RoseRS_1524: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_2870: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
PF01636	Chloroflexus aggregans DSM 9485 Gene: Cagg_0250: aminoglycoside phosphotransferase	Chloroflexus sp. Y-400-fl Gene: Chy400_3770: aminoglycoside phosphotransferase	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2282: aminoglycoside phosphotransferase	Roseiflexus sp. RS-1 Gene: RoseRS_1523: aminoglycoside phosphotransferase	Herpetosiphon aurantiacus ATCC 23779	aminoglycoside phosphotransferase
gcvP2	Chloroflexus aggregans DSM 9485 Gene: Cagg_0249: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Chloroflexus sp. Y-400-fl Gene: Chy400_3771: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2281: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Roseiflexus sp. RS-1 Gene: RoseRS_1522: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_2871: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
lplA	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -134 score = 59.38 sequence = GACAGCGCTCTGGAG... Site: position = -233 score = 48.92 sequence = TGAAGGACGCGGAAG... Gene: Haur_2867: Lipoate-protein ligase A	Lipoate-protein ligase A

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Glycine - Chloroflexia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --