Regulog FMN - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 6 | 2 |
| Chloroflexus sp. Y-400-fl | 6 | 2 |
| Roseiflexus castenholzii DSM 13941 | 2 | 1 |
| Roseiflexus sp. RS-1 | 4 | 2 |
| Herpetosiphon aurantiacus ATCC 23779 | 2 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| ribX |
*
Chloroflexus aggregans DSM 9485 Site: position = -280 score = 109.11 sequence = AAACGATCTTCGGGG... Gene: Cagg_2734: Predicted riboflavin ABC transporter, transmembrane component RibX |
*
Chloroflexus sp. Y-400-fl Site: position = -279 score = 106.67 sequence = ACGATCTTCGGGGCA... Gene: Chy400_0882: Predicted riboflavin ABC transporter, transmembrane component RibX |
*
Roseiflexus castenholzii DSM 13941 Site: position = -386 score = 97.63 sequence = CTACGATCTTCGGGG... Gene: Rcas_2389: Predicted riboflavin ABC transporter, transmembrane component RibX |
*
Roseiflexus sp. RS-1 Site: position = -360 score = 97.3 sequence = GCACGATCTTCGGGG... Gene: RoseRS_2763: Predicted riboflavin ABC transporter, transmembrane component RibX |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -285 score = 99.73 sequence = TTGGTCTTCAGGGTT... Gene: Haur_1578: Predicted riboflavin ABC transporter, transmembrane component RibX |
Predicted riboflavin ABC transporter, transmembrane component RibX |
| ribY |
Gene: Cagg_2733: Predicted riboflavin ABC transporter, substrate-binding component RibY |
Gene: Chy400_0883: Predicted riboflavin ABC transporter, substrate-binding component RibY |
Gene: Rcas_2388: Predicted riboflavin ABC transporter, substrate-binding component RibY |
Gene: RoseRS_2762: Predicted riboflavin ABC transporter, substrate-binding component RibY |
Gene: Haur_1579: Predicted riboflavin ABC transporter, substrate-binding component RibY |
Predicted riboflavin ABC transporter, substrate-binding component RibY |
| CRON 2. | ||||||
| ribD |
*
Chloroflexus aggregans DSM 9485 Site: position = -335 score = 90.09 sequence = CAAACCTTCGGGGCA... Gene: Cagg_2639: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Chloroflexus sp. Y-400-fl Site: position = -283 score = 111.77 sequence = AAGACCTTCGGGGCA... Gene: Chy400_2370: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
|
Gene: Haur_2423: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
Gene: Cagg_2640: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Chy400_2371: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
*
Roseiflexus sp. RS-1 Site: position = -385 score = 93.07 sequence = AGAACCTTCGGGGCA... Gene: RoseRS_0969: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Haur_1304: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: Cagg_2641: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) |
Gene: Chy400_2372: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: RoseRS_0970: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: Cagg_2642: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Chy400_2373: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
Gene: Haur_1586: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |