Regulog yybP-ykoY - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | 1 | 1 |
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 1 | 1 |
| Lactobacillus acidophilus NCFM | 2 | 2 |
| Lactobacillus johnsonii NCC 533 | 2 | 2 |
| Lactobacillus plantarum WCFS1 | 1 | 1 |
| Lactobacillus casei ATCC 334 | 1 | 1 |
| Lactobacillus brevis ATCC 367 | 1 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| atcL |
*
Oenococcus oeni PSU-1 Site: position = -131 score = 28.3 sequence = AACTTATTAAATGAG... Gene: OEOE_1363: Calcium-transporting ATPase (EC 3.6.3.8) |
|
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|
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -155 score = 48.1 sequence = ATCATGTCATAAGGG... Gene: LBUL_0406: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Lactobacillus acidophilus NCFM Site: position = -144 score = 48.25 sequence = AACTTGTCATAAGGG... Gene: LBA0523: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -166 score = 42.65 sequence = AATATACATATAGGG... Gene: LBA1389: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Lactobacillus johnsonii NCC 533 Site: position = -126 score = 51.49 sequence = CTATAGATGCATAAG... Gene: LJ1731: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -172 score = 55.92 sequence = AACCAACATATAGGG... Gene: LJ0957: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Lactobacillus plantarum WCFS1 Site: position = -189 score = 64.13 sequence = ATACAATCATAAGGG... Gene: lp_0567: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Lactobacillus casei ATCC 334 Site: position = -160 score = 55.97 sequence = TTTAACCAACATAGG... Gene: LSEI_1801: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Lactobacillus brevis ATCC 367 Site: position = -181 score = 58.91 sequence = CTACAGCAACATAAG... Gene: LVIS_0947: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -161 score = 47.91 sequence = GAGGTTAACGATAAG... Gene: LSA1568: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -173 score = 54.6 sequence = AATTGTAGACATGAG... Gene: PEPE_1523: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -207 score = 36.58 sequence = GTTAATTTCTGAGGG... Gene: LEUM_0434: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Lactobacillus rhamnosus GG Site: position = -162 score = 56.07 sequence = TTTACTCAACATAGG... Gene: LGG_01855: Calcium-transporting ATPase (EC 3.6.3.8) |
Calcium-transporting ATPase (EC 3.6.3.8) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |