Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 2 2
Lactobacillus johnsonii NCC 533 2 2
Lactobacillus plantarum WCFS1 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
atcL
*
Oenococcus oeni PSU-1

Site:
position = -131
score = 28.3
sequence = AACTTATTAAATGAG...

Gene: OEOE_1363: Calcium-transporting ATPase (EC 3.6.3.8)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -155
score = 48.1
sequence = ATCATGTCATAAGGG...

Gene: LBUL_0406: Calcium-transporting ATPase (EC 3.6.3.8)
*2
Lactobacillus acidophilus NCFM

Site:
position = -144
score = 48.25
sequence = AACTTGTCATAAGGG...

Gene: LBA0523: Calcium-transporting ATPase (EC 3.6.3.8)

Site:
position = -166
score = 42.65
sequence = AATATACATATAGGG...

Gene: LBA1389: Calcium-transporting ATPase (EC 3.6.3.8)
*2
Lactobacillus johnsonii NCC 533

Site:
position = -126
score = 51.49
sequence = CTATAGATGCATAAG...

Gene: LJ1731: Calcium-transporting ATPase (EC 3.6.3.8)

Site:
position = -172
score = 55.92
sequence = AACCAACATATAGGG...

Gene: LJ0957: Calcium-transporting ATPase (EC 3.6.3.8)
*
Lactobacillus plantarum WCFS1

Site:
position = -189
score = 64.13
sequence = ATACAATCATAAGGG...

Gene: lp_0567: Calcium-transporting ATPase (EC 3.6.3.8)
*
Lactobacillus casei ATCC 334

Site:
position = -160
score = 55.97
sequence = TTTAACCAACATAGG...

Gene: LSEI_1801: Calcium-transporting ATPase (EC 3.6.3.8)
*
Lactobacillus brevis ATCC 367

Site:
position = -181
score = 58.91
sequence = CTACAGCAACATAAG...

Gene: LVIS_0947: Calcium-transporting ATPase (EC 3.6.3.8)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -161
score = 47.91
sequence = GAGGTTAACGATAAG...

Gene: LSA1568: Calcium-transporting ATPase (EC 3.6.3.8)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -173
score = 54.6
sequence = AATTGTAGACATGAG...

Gene: PEPE_1523: Calcium-transporting ATPase (EC 3.6.3.8)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -207
score = 36.58
sequence = GTTAATTTCTGAGGG...

Gene: LEUM_0434: Calcium-transporting ATPase (EC 3.6.3.8)
*
Lactobacillus rhamnosus GG

Site:
position = -162
score = 56.07
sequence = TTTACTCAACATAGG...

Gene: LGG_01855: Calcium-transporting ATPase (EC 3.6.3.8)
Calcium-transporting ATPase (EC 3.6.3.8)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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