Regulog ykoK - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | ykoK |
| RFAM: | RF00380 |
| Regulation mode: | |
| Biological process: | Magnesium homeostasis |
| Effector: | Magnesium ion, (Mg2+) |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - ykoK
- By effector - Magnesium ion, (Mg2+)
- By pathway - Magnesium homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | 2 | 2 |
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 1 | 1 |
| Lactobacillus acidophilus NCFM | 1 | 1 |
| Lactobacillus johnsonii NCC 533 | 2 | 2 |
| Lactobacillus plantarum WCFS1 | 3 | 1 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | 4 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| COG0474 |
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Lactobacillus sakei subsp. sakei 23K Site: position = -390 score = 133.23 sequence = ATCGCTTTTCCGTTA... Gene: LSA1086: Na+/K+ ATPase alpha subunit |
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Lactobacillus rhamnosus GG Site: position = -376 score = 126.09 sequence = GTGCTTTCCGTTAGG... Gene: LGG_01319: Na+/K+ ATPase alpha subunit |
Na+/K+ ATPase alpha subunit |
| CRON 2. | ||||||||||||||||
| lp_2077 |
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Lactobacillus plantarum WCFS1 Site: position = -265 score = 125.51 sequence = AATCAGTTGCAATTA... Gene: lp_2077: ABC-type anion transport system, duplicated permease component |
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*2
Lactobacillus brevis ATCC 367 Site: position = -376 score = 132.28 sequence = AATAAATTGCAATTA... Gene: LVIS_2157: ABC-type anion transport system, duplicated permease component Gene: LVIS_2156: ABC-type anion transport system, duplicated permease component |
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ABC-type anion transport system, duplicated permease component |
| lp_2076 |
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Gene: lp_2076: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
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Gene: LVIS_2155: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
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ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
| lp_2075 |
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Gene: lp_2075: Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556) |
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Gene: LVIS_2154: Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556) |
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Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556) |
| CRON 3. | ||||||||||||||||
| mgtB |
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*2
Lactobacillus helveticus DPC 4571 Site: position = -247 score = 123.27 sequence = AGTAAAACTGTTAGG... Gene: lhv_0228: Mg(2+) transport ATPase, P-type 2 Site: position = -207 score = 125.57 sequence = AAATGAACTGTTAGG... Gene: lhv_0360: Mg(2+) transport ATPase, P-type 2 |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -252 score = 128.69 sequence = AAATGAACTGTTAGG... Gene: LBUL_0296: Mg(2+) transport ATPase, P-type 2 |
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Lactobacillus acidophilus NCFM Site: position = -245 score = 123.8 sequence = ATAAAAACTGTTAGG... Gene: LBA0212: Mg(2+) transport ATPase, P-type 2 |
*2
Lactobacillus johnsonii NCC 533 Site: position = -241 score = 127.34 sequence = AAATAAACTGTTAGG... Gene: LJ0201: Mg(2+) transport ATPase, P-type 2 Site: position = -183 score = 134.09 sequence = AAATAAACTGTTAGG... Gene: LJ1155: Mg(2+) transport ATPase, P-type 2 |
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Mg(2+) transport ATPase, P-type 2 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |