Statistics of regulated genes

Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571	2	2
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1	1
Lactobacillus acidophilus NCFM	1	1
Lactobacillus johnsonii NCC 533	2	2
Lactobacillus plantarum WCFS1	3	1
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367	4	1
Lactobacillus sakei subsp. sakei 23K	1	1
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
COG0474	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	* Lactobacillus sakei subsp. sakei 23K Site: position = -390 score = 133.23 sequence = ATCGCTTTTCCGTTA... Gene: LSA1086: Na+/K+ ATPase alpha subunit	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	* Lactobacillus rhamnosus GG Site: position = -376 score = 126.09 sequence = GTGCTTTCCGTTAGG... Gene: LGG_01319: Na+/K+ ATPase alpha subunit	Na+/K+ ATPase alpha subunit
CRON 2.
lp_2077	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -265 score = 125.51 sequence = AATCAGTTGCAATTA... Gene: lp_2077: ABC-type anion transport system, duplicated permease component	Lactobacillus casei ATCC 334	*2 Lactobacillus brevis ATCC 367 Site: position = -376 score = 132.28 sequence = AATAAATTGCAATTA... Gene: LVIS_2157: ABC-type anion transport system, duplicated permease component Gene: LVIS_2156: ABC-type anion transport system, duplicated permease component	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	ABC-type anion transport system, duplicated permease component
lp_2076	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2076: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_2155: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
lp_2075	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2075: Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_2154: Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)
CRON 3.
mgtB	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	*2 Lactobacillus helveticus DPC 4571 Site: position = -247 score = 123.27 sequence = AGTAAAACTGTTAGG... Gene: lhv_0228: Mg(2+) transport ATPase, P-type 2 Site: position = -207 score = 125.57 sequence = AAATGAACTGTTAGG... Gene: lhv_0360: Mg(2+) transport ATPase, P-type 2	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -252 score = 128.69 sequence = AAATGAACTGTTAGG... Gene: LBUL_0296: Mg(2+) transport ATPase, P-type 2	* Lactobacillus acidophilus NCFM Site: position = -245 score = 123.8 sequence = ATAAAAACTGTTAGG... Gene: LBA0212: Mg(2+) transport ATPase, P-type 2	*2 Lactobacillus johnsonii NCC 533 Site: position = -241 score = 127.34 sequence = AAATAAACTGTTAGG... Gene: LJ0201: Mg(2+) transport ATPase, P-type 2 Site: position = -183 score = 134.09 sequence = AAATAAACTGTTAGG... Gene: LJ1155: Mg(2+) transport ATPase, P-type 2	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Mg(2+) transport ATPase, P-type 2

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