Regulog ykkC-yxkD - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | 2 | 1 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| COG3603 |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -152 score = 85.25 sequence = CTATAGTTTTCTAGG... Gene: LEUM_1913: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||||||
| ykkC |
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Lactobacillus brevis ATCC 367 Site: position = -175 score = 70.06 sequence = AATTTGTTCTCTAGG... Gene: LVIS_2166: Quaternary ammonium compound-resistance protein sugE |
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Quaternary ammonium compound-resistance protein sugE |
| ykkD |
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Gene: LVIS_2167: Quaternary ammonium compound-resistance protein sugE |
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Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |