Regulog preQ1-II - Streptococcaceae
| Regulator type: | RNA regulatory element |
| Name: | preQ1-II |
| RFAM: | RF01054 |
| Regulation mode: | |
| Biological process: | Queuosine biosynthesis |
| Effector: | Pre-queuosine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Streptococcaceae
- By RNA motif - preQ1-II
- By effector - Pre-queuosine
- By pathway - Queuosine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Streptococcus pneumoniae TIGR4 | 1 | 1 |
| Streptococcus gallolyticus UCN34 | 1 | 1 |
| Streptococcus dysgalactiae subsp. equisimilis GGS_124 | 1 | 1 |
| Streptococcus suis 05ZYH33 | 1 | 1 |
| Lactococcus lactis subsp. lactis Il1403 | 1 | 1 |
| Lactococcus lactis subsp. cremoris SK11 | 1 | 1 |
| Streptococcus uberis 0140J | 1 | 1 |
| Streptococcus agalactiae 2603V/R | 1 | 1 |
| Streptococcus sanguinis SK36 | 1 | 1 |
| Streptococcus pyogenes M1 GAS | 1 | 1 |
| Streptococcus mutans UA159 | 1 | 1 |
| Streptococcus thermophilus CNRZ1066 | ||
| Streptococcus gordonii str. Challis substr. CH1 | 1 | 1 |
| Streptococcus equi subsp. zooepidemicus MGCS10565 | 1 | 1 |
| Streptococcus mitis B6 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| queT |
*
Streptococcus pneumoniae TIGR4 Site: position = -93 score = 100.73 sequence = GTGCTATACTAGTAA... Gene: SP_1012: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus gallolyticus UCN34 Site: position = -115 score = 72.39 sequence = GTGCTATACTTTTAA... Gene: GALLO_0778: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -116 score = 82.68 sequence = GTGGTACAATGTAAC... Gene: SDEG_0715: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus suis 05ZYH33 Site: position = -101 score = 68.23 sequence = ATATGCTATACTAAT... Gene: SSU05_1614: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Lactococcus lactis subsp. lactis Il1403 Site: position = -39 score = 86.81 sequence = CTGCTAAAATAAAAA... Gene: L2611: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Lactococcus lactis subsp. cremoris SK11 Site: position = -103 score = 80.15 sequence = CTGTTAAAATAAAAA... Gene: LACR_0847: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus uberis 0140J Site: position = -113 score = 83.22 sequence = ATGCTACAATAATAA... Gene: SUB0657: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus agalactiae 2603V/R Site: position = -110 score = 87.45 sequence = GTGATATACTTAGTA... Gene: SAG0849: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus sanguinis SK36 Site: position = -105 score = 80.47 sequence = GTGGGGGAATCAACT... Gene: SSA_1485: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus pyogenes M1 GAS Site: position = -112 score = 88.97 sequence = ATGGTACAATGTAAC... Gene: SPy0749: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus mutans UA159 Site: position = -95 score = 95.43 sequence = ATATGCTATACTGGA... Gene: SMU.1545c: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Gene: str1555: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus gordonii str. Challis substr. CH1 Site: position = -133 score = 74.97 sequence = TTATGCTATACTAGT... Gene: SGO_1391: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -115 score = 76.96 sequence = ATGGTACAATGTAGG... Gene: Sez_0783: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
*
Streptococcus mitis B6 Site: position = -95 score = 95.83 sequence = TTGTGCTATACTAGT... Gene: smi_1135: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |