Regulog preQ1-II - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | preQ1-II |
| RFAM: | RF01054 |
| Regulation mode: | |
| Biological process: | Queuosine biosynthesis |
| Effector: | Pre-queuosine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - preQ1-II
- By effector - Pre-queuosine
- By pathway - Queuosine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus casei ATCC 334 | 1 | 1 |
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| queT |
Gene: OEOE_0124: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Gene: LSL_1470: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Lactobacillus casei ATCC 334 Site: position = -97 score = 56.57 sequence = AACACCAAAACTGAA... Gene: LSEI_2056: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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*2
Pediococcus pentosaceus ATCC 25745 Site: position = -112 score = 15.01 sequence = ATGATAGAATTCTGT... Gene: PEPE_1764: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter Gene: PEPE_0901: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Gene: LEUM_1240: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Lactobacillus rhamnosus GG Site: position = -125 score = 44.56 sequence = GAAAAGTAAACTGGA... Gene: LGG_02057: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |