Regulog preQ1-II - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	preQ1-II
RFAM:	RF01054
Regulation mode:
Biological process:	Queuosine biosynthesis
Effector:	Pre-queuosine
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - preQ1-II
By effector - Pre-queuosine
By pathway - Queuosine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus casei ATCC 334	1	1
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745	1	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
queT	Oenococcus oeni PSU-1 Gene: OEOE_0124: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1470: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	* Lactobacillus casei ATCC 334 Site: position = -97 score = 56.57 sequence = AACACCAAAACTGAA... Gene: LSEI_2056: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	2 Pediococcus pentosaceus ATCC 25745* Site: position = -112 score = 15.01 sequence = ATGATAGAATTCTGT... Gene: PEPE_1764: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter Gene: PEPE_0901: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1240: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Lactobacillus rhamnosus GG Site: position = -125 score = 44.56 sequence = GAAAAGTAAACTGGA... Gene: LGG_02057: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog preQ1-II - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --