Regulog S15 - Streptococcaceae
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Streptococcaceae
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rpsO |
*
Streptococcus pneumoniae TIGR4 Site: position = -61 score = 27.37 sequence = TCTTGGTTACAGGCA... Gene: SP_1626: SSU ribosomal protein S15p (S13e) |
*
Streptococcus gallolyticus UCN34 Site: position = -63 score = 24.95 sequence = TTGGTTGTAGGAGAC... Gene: GALLO_0219: SSU ribosomal protein S15p (S13e) |
*
Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -61 score = 24.37 sequence = TTCTTGGTTTTAGGA... Gene: SDEG_0253: SSU ribosomal protein S15p (S13e) |
*
Streptococcus suis 05ZYH33 Site: position = -70 score = 21.13 sequence = AGCTTTTTCTTGAGT... Gene: SSU05_1934: SSU ribosomal protein S15p (S13e) |
*
Lactococcus lactis subsp. lactis Il1403 Site: position = -67 score = 25.7 sequence = CGTTCTTGGTTTCAT... Gene: L0392: SSU ribosomal protein S15p (S13e) |
*
Lactococcus lactis subsp. cremoris SK11 Site: position = -67 score = 25.7 sequence = CGTTCTTGGTTTCAT... Gene: LACR_2081: SSU ribosomal protein S15p (S13e) |
*
Streptococcus uberis 0140J Site: position = -60 score = 27.14 sequence = TTCTTGGTTTTAGGA... Gene: SUB0266: SSU ribosomal protein S15p (S13e) |
*
Streptococcus agalactiae 2603V/R Site: position = -61 score = 24.14 sequence = TTCTTGGTTTTAGGA... Gene: SAG0202: SSU ribosomal protein S15p (S13e) |
*
Streptococcus sanguinis SK36 Site: position = -35 score = 27.78 sequence = TCTTGGTTGCAGGCC... Gene: SSA_2058: SSU ribosomal protein S15p (S13e) |
*
Streptococcus pyogenes M1 GAS Site: position = -63 score = 25.75 sequence = TTTTCTTGGTTTTAG... Gene: SPy1955: SSU ribosomal protein S15p (S13e) |
*
Streptococcus mutans UA159 Site: position = -59 score = 19.73 sequence = TTGGTTCTAGGATTC... Gene: SMU.154: SSU ribosomal protein S15p (S13e) |
*
Streptococcus thermophilus CNRZ1066 Site: position = -63 score = 26.2 sequence = TCTTTCTTGGTTTTA... Gene: str0154: SSU ribosomal protein S15p (S13e) |
*
Streptococcus gordonii str. Challis substr. CH1 Site: position = -60 score = 27.78 sequence = TTGGTTGCAGGCCAT... Gene: SGO_0333: SSU ribosomal protein S15p (S13e) |
*
Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -64 score = 30.1 sequence = ACTTTTTCTTGGTTT... Gene: Sez_1758: SSU ribosomal protein S15p (S13e) |
*
Streptococcus mitis B6 Site: position = -59 score = 27.37 sequence = TTGGTTACAGGCATG... Gene: smi_0656: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |