Statistics of regulated genes

Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118	3	2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	3	2
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K	3	2
Pediococcus pentosaceus ATCC 25745	1	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	3	2
Lactobacillus rhamnosus GG

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
queT	Oenococcus oeni PSU-1 Gene: OEOE_0124: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -56 score = 46.92 sequence = TTCCACACTGGTTCG... Gene: LSL_1470: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -53 score = 45.55 sequence = AATACGTGGTTCGTA... Gene: lp_0533: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	2 Lactobacillus casei ATCC 334 Gene: LSEI_2557: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter Gene: LSEI_2056: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Lactobacillus brevis ATCC 367 Gene: LVIS_2280: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Lactobacillus sakei subsp. sakei 23K Site: position = -52 score = 52.48 sequence = AAAAAACGTGGTTCG... Gene: LSA1610: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	*2 Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1764: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter Site: position = -54 score = 17.44 sequence = ACACGGTGGTTCGAA... Gene: PEPE_0901: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -53 score = 45.98 sequence = AATAATAGCGGTTCA... Gene: LEUM_1240: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	2 Lactobacillus rhamnosus GG Gene: LGG_02532: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter Gene: LGG_02057: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
CRON 2.
iunH	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -61 score = 50.15 sequence = TTGGACTGGTTCGTA... Gene: LSL_1528: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -66 score = 48.24 sequence = AGCTGGCCTGGTTCG... Gene: lp_2825: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	* Lactobacillus sakei subsp. sakei 23K Site: position = -64 score = 47.15 sequence = GCTTGGACTGGTTCG... Gene: LSA0830: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Pediococcus pentosaceus ATCC 25745	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -89 score = 31.74 sequence = CCGGACTGGTTCGGA... Gene: LEUM_0759: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Lactobacillus rhamnosus GG	preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
qrtT	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1529: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2824: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K Gene: LSA0829: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0760: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Lactobacillus rhamnosus GG	Substrate-specific component STY3230 of queuosine-regulated ECF transporter

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD