Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PreQ1 - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: PreQ1
RFAM: RF00522
Regulation mode:
Biological process: Queuosine biosynthesis
Effector: Pre-queuosine1
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118 3 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 3 2
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K 3 2
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 3 2
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
queT
 
Oenococcus oeni PSU-1

Gene: OEOE_0124: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -56
score = 46.92
sequence = TTCCACACTGGTTCG...

Gene: LSL_1470: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -53
score = 45.55
sequence = AATACGTGGTTCGTA...

Gene: lp_0533: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 2
Lactobacillus casei ATCC 334

Gene: LSEI_2557: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

Gene: LSEI_2056: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2280: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -52
score = 52.48
sequence = AAAAAACGTGGTTCG...

Gene: LSA1610: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
*2
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1764: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

Site:
position = -54
score = 17.44
sequence = ACACGGTGGTTCGAA...

Gene: PEPE_0901: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -53
score = 45.98
sequence = AATAATAGCGGTTCA...

Gene: LEUM_1240: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 2
Lactobacillus rhamnosus GG

Gene: LGG_02532: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

Gene: LGG_02057: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
CRON 2.
iunH
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -61
score = 50.15
sequence = TTGGACTGGTTCGTA...

Gene: LSL_1528: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -66
score = 48.24
sequence = AGCTGGCCTGGTTCG...

Gene: lp_2825: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -64
score = 47.15
sequence = GCTTGGACTGGTTCG...

Gene: LSA0830: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -89
score = 31.74
sequence = CCGGACTGGTTCGGA...

Gene: LEUM_0759: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
 
Lactobacillus rhamnosus GG
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
qrtT
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1529: Substrate-specific component STY3230 of queuosine-regulated ECF transporter
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2824: Substrate-specific component STY3230 of queuosine-regulated ECF transporter
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0829: Substrate-specific component STY3230 of queuosine-regulated ECF transporter
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0760: Substrate-specific component STY3230 of queuosine-regulated ECF transporter
 
Lactobacillus rhamnosus GG
Substrate-specific component STY3230 of queuosine-regulated ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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