Regulog L20_leader - Streptococcaceae
Regulator type: | RNA regulatory element |
Name: | L20_leader |
RFAM: | RF00558 |
Regulation mode: | |
Biological process: | Ribosome biogenesis |
Effector: | |
Phylum: | Firmicutes |

Member of regulog collections
- By taxonomy - Streptococcaceae
- By RNA motif - L20_leader
- By pathway - Ribosome biogenesis
Genes | Function | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CRON 1. | ||||||||||||||||
infC |
*
Streptococcus pneumoniae TIGR4 Site: position = -119 score = 71.82 sequence = GAGAAAAGCAGAAGT... Gene: SP_0959: Translation initiation factor 3 |
*
Streptococcus gallolyticus UCN34 Site: position = -143 score = 74.07 sequence = ATGAGAAAAGCAGAA... Gene: GALLO_1361: Translation initiation factor 3 |
*
Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -137 score = 77.6 sequence = GAGAAAAGCAGAAGT... Gene: SDEG_0770: Translation initiation factor 3 |
*
Streptococcus suis 05ZYH33 Site: position = -170 score = 66.7 sequence = TTGAGAAAAGCAGAA... Gene: SSU05_1270: Translation initiation factor 3 |
*
Lactococcus lactis subsp. lactis Il1403 Site: position = -213 score = 80.31 sequence = AGTTGAAAAGCAGAA... Gene: L95240: Translation initiation factor 3 |
*
Lactococcus lactis subsp. cremoris SK11 Site: position = -58 score = 81.67 sequence = AGTTGAAAAGCAGAA... Gene: LACR_2033: Translation initiation factor 3 |
*
Streptococcus uberis 0140J Site: position = -138 score = 79.79 sequence = GAGAAAAGTAGAAGT... Gene: SUB0711: Translation initiation factor 3 |
*
Streptococcus agalactiae 2603V/R Site: position = -141 score = 83.74 sequence = ATGAGAAAAGCAGAA... Gene: SAG1384: Translation initiation factor 3 |
*
Streptococcus sanguinis SK36 Site: position = -148 score = 75.97 sequence = TTGAGAAAAGCAGAA... Gene: SSA_1500: Translation initiation factor 3 |
*
Streptococcus pyogenes M1 GAS Site: position = -137 score = 77.82 sequence = GAGAAAAGTAGAAGT... Gene: SPy0804: Translation initiation factor 3 |
*
Streptococcus mutans UA159 Site: position = -142 score = 77.57 sequence = GAGAAAAGCAGAAGT... Gene: SMU.697: Translation initiation factor 3 |
*
Streptococcus thermophilus CNRZ1066 Site: position = -137 score = 77.32 sequence = ATGAGAAAAGCAGAA... Gene: str1134: Translation initiation factor 3 |
*
Streptococcus gordonii str. Challis substr. CH1 Site: position = -244 score = 76.9 sequence = GAGAAAAGCAGAAGT... Gene: SGO_1032: Translation initiation factor 3 |
*
Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -136 score = 72.03 sequence = GAGAAAAGCAGAAGT... Gene: Sez_0857: Translation initiation factor 3 |
*
Streptococcus mitis B6 Site: position = -119 score = 66.63 sequence = GAGAAAAGCAGAAGT... Gene: smi_0959: Translation initiation factor 3 |
Translation initiation factor 3 |
rpmI |
Gene: SP_0960: LSU ribosomal protein L35p |
Gene: GALLO_1360: LSU ribosomal protein L35p |
Gene: SDEG_0771: LSU ribosomal protein L35p |
Gene: SSU05_1269: LSU ribosomal protein L35p |
Gene: L0430: LSU ribosomal protein L35p |
Gene: LACR_2032: LSU ribosomal protein L35p |
Gene: SUB0712: LSU ribosomal protein L35p |
Gene: SAG1383: LSU ribosomal protein L35p |
Gene: SSA_1499: LSU ribosomal protein L35p |
Gene: SPy0805: LSU ribosomal protein L35p |
Gene: SMU.698: LSU ribosomal protein L35p |
Gene: str1133: LSU ribosomal protein L35p |
Gene: SGO_1033: LSU ribosomal protein L35p |
Gene: Sez_0858: LSU ribosomal protein L35p |
Gene: smi_0960: LSU ribosomal protein L35p |
LSU ribosomal protein L35p |
rplT |
Gene: SP_0961: LSU ribosomal protein L20p |
Gene: GALLO_1359: LSU ribosomal protein L20p |
Gene: SDEG_0772: LSU ribosomal protein L20p |
Gene: SSU05_1268: LSU ribosomal protein L20p |
Gene: L0416: LSU ribosomal protein L20p |
Gene: LACR_2031: LSU ribosomal protein L20p |
Gene: SUB0713: LSU ribosomal protein L20p |
Gene: SAG1382: LSU ribosomal protein L20p |
Gene: SSA_1498: LSU ribosomal protein L20p |
Gene: SPy0806: LSU ribosomal protein L20p |
Gene: SMU.699: LSU ribosomal protein L20p |
Gene: str1132: LSU ribosomal protein L20p |
Gene: SGO_1034: LSU ribosomal protein L20p |
Gene: Sez_0859: LSU ribosomal protein L20p |
Gene: smi_0961: LSU ribosomal protein L20p |
LSU ribosomal protein L20p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |