Statistics of regulated genes

Genome	Genes	Operons
Oenococcus oeni PSU-1	3	1
Lactobacillus reuteri JCM 1112	3	1
Lactobacillus helveticus DPC 4571	3	1
Lactobacillus fermentum IFO 3956	3	1
Lactobacillus salivarius subsp. salivarius UCC118	3	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	3	1
Lactobacillus acidophilus NCFM	3	1
Lactobacillus johnsonii NCC 533	3	1
Lactobacillus plantarum WCFS1	3	1
Lactobacillus casei ATCC 334	3	1
Lactobacillus brevis ATCC 367	3	1
Lactobacillus sakei subsp. sakei 23K	3	1
Pediococcus pentosaceus ATCC 25745	3	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	3	1
Lactobacillus rhamnosus GG	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
infC	* Oenococcus oeni PSU-1 Site: position = -85 score = 29.48 sequence = TTGAATTAAGTAGAG... Gene: OEOE_1280: Translation initiation factor 3	* Lactobacillus reuteri JCM 1112 Site: position = -180 score = 57.75 sequence = AAAGAAAAAGCAGAA... Gene: LAR_1175: Translation initiation factor 3	* Lactobacillus helveticus DPC 4571 Site: position = -315 score = 61.4 sequence = TGAGAACAAGAAGAA... Gene: lhv_1598: Translation initiation factor 3	* Lactobacillus fermentum IFO 3956 Site: position = -181 score = 60.36 sequence = AAAGAAAAAGTAGAA... Gene: LAF_1311: Translation initiation factor 3	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -154 score = 56.12 sequence = AGAAAAAGCAGAGGC... Gene: LSL_0495: Translation initiation factor 3	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -160 score = 67.22 sequence = TGAGAACAAGAAGAA... Gene: LBUL_1398: Translation initiation factor 3	* Lactobacillus acidophilus NCFM Site: position = -220 score = 74.71 sequence = TGAGAACAAGAAGAA... Gene: LBA1538: Translation initiation factor 3	* Lactobacillus johnsonii NCC 533 Site: position = -152 score = 66.88 sequence = TGAGAACAAGAAGAA... Gene: LJ1641: Translation initiation factor 3	* Lactobacillus plantarum WCFS1 Site: position = -146 score = 88.76 sequence = AAAAAAAGCAGAAGC... Gene: lp_1515: Translation initiation factor 3	* Lactobacillus casei ATCC 334 Site: position = -192 score = 52.5 sequence = TGAGAAAAAGCAGAA... Gene: LSEI_1699: Translation initiation factor 3	* Lactobacillus brevis ATCC 367 Site: position = -235 score = 50.77 sequence = AGAAATTAAGCAGAG... Gene: LVIS_1035: Translation initiation factor 3	* Lactobacillus sakei subsp. sakei 23K Site: position = -189 score = 57.65 sequence = AGAAATAAAGCAGAA... Gene: LSA1398: Translation initiation factor 3	* Pediococcus pentosaceus ATCC 25745 Site: position = -168 score = 70.66 sequence = AGAAAAAGCAGAAGC... Gene: PEPE_0699: Translation initiation factor 3	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -246 score = 57.74 sequence = GTTGAACAAGTAGAA... Gene: LEUM_1443: Translation initiation factor 3	* Lactobacillus rhamnosus GG Site: position = -192 score = 52.17 sequence = TGAGAAAAAGCAGAA... Gene: LGG_01747: Translation initiation factor 3	Translation initiation factor 3
rpmI	Oenococcus oeni PSU-1 Gene: OEOE_1279: LSU ribosomal protein L35p	Lactobacillus reuteri JCM 1112 Gene: LAR_1174: LSU ribosomal protein L35p	Lactobacillus helveticus DPC 4571 Gene: lhv_1597: LSU ribosomal protein L35p	Lactobacillus fermentum IFO 3956 Gene: LAF_1310: LSU ribosomal protein L35p	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0496: LSU ribosomal protein L35p	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1397: LSU ribosomal protein L35p	Lactobacillus acidophilus NCFM Gene: LBA1537: LSU ribosomal protein L35p	Lactobacillus johnsonii NCC 533 Gene: LJ1640b: LSU ribosomal protein L35p	Lactobacillus plantarum WCFS1 Gene: lp_1516: LSU ribosomal protein L35p	Lactobacillus casei ATCC 334 Gene: LSEI_1698: LSU ribosomal protein L35p	Lactobacillus brevis ATCC 367 Gene: LVIS_1034: LSU ribosomal protein L35p	Lactobacillus sakei subsp. sakei 23K Gene: LSA1397: LSU ribosomal protein L35p	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0700: LSU ribosomal protein L35p	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1442: LSU ribosomal protein L35p	Lactobacillus rhamnosus GG Gene: LGG_01746: LSU ribosomal protein L35p	LSU ribosomal protein L35p
rplT	Oenococcus oeni PSU-1 Gene: OEOE_1278: LSU ribosomal protein L20p	Lactobacillus reuteri JCM 1112 Gene: LAR_1173: LSU ribosomal protein L20p	Lactobacillus helveticus DPC 4571 Gene: lhv_1596: LSU ribosomal protein L20p	Lactobacillus fermentum IFO 3956 Gene: LAF_1309: LSU ribosomal protein L20p	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0497: LSU ribosomal protein L20p	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1396: LSU ribosomal protein L20p	Lactobacillus acidophilus NCFM Gene: LBA1536: LSU ribosomal protein L20p	Lactobacillus johnsonii NCC 533 Gene: LJ1640: LSU ribosomal protein L20p	Lactobacillus plantarum WCFS1 Gene: lp_1517: LSU ribosomal protein L20p	Lactobacillus casei ATCC 334 Gene: LSEI_1697: LSU ribosomal protein L20p	Lactobacillus brevis ATCC 367 Gene: LVIS_1033: LSU ribosomal protein L20p	Lactobacillus sakei subsp. sakei 23K Gene: LSA1396: LSU ribosomal protein L20p	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0701: LSU ribosomal protein L20p	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1441: LSU ribosomal protein L20p	Lactobacillus rhamnosus GG Gene: LGG_01745: LSU ribosomal protein L20p	LSU ribosomal protein L20p

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