Regulog L19_leader - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | L19_leader |
| RFAM: | RF00556 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - L19_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus helveticus DPC 4571 | 1 | 1 |
| Lactobacillus fermentum IFO 3956 | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 1 | 1 |
| Lactobacillus acidophilus NCFM | 1 | 1 |
| Lactobacillus johnsonii NCC 533 | 1 | 1 |
| Lactobacillus plantarum WCFS1 | 1 | 1 |
| Lactobacillus casei ATCC 334 | 1 | 1 |
| Lactobacillus brevis ATCC 367 | 1 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rplS |
Gene: OEOE_0802: LSU ribosomal protein L19p |
*
Lactobacillus reuteri JCM 1112 Site: position = -61 score = 30.39 sequence = AACGGTATTCCGCTG... Gene: LAR_1082: LSU ribosomal protein L19p |
*
Lactobacillus helveticus DPC 4571 Site: position = -59 score = 18.71 sequence = ATGGGTGTTCCGCTG... Gene: lhv_1368: LSU ribosomal protein L19p |
*
Lactobacillus fermentum IFO 3956 Site: position = -59 score = 25.89 sequence = AACGGTATTCCGCTG... Gene: LAF_1219: LSU ribosomal protein L19p |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -50 score = 30.19 sequence = CGATATTCCGCTGCA... Gene: LSL_0636: LSU ribosomal protein L19p |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -56 score = 23.0 sequence = ATGGGTGTTCCGCTG... Gene: LBUL_1273: LSU ribosomal protein L19p |
*
Lactobacillus acidophilus NCFM Site: position = -59 score = 31.49 sequence = ATGGGTATTCCGCTG... Gene: LBA1286: LSU ribosomal protein L19p |
*
Lactobacillus johnsonii NCC 533 Site: position = -55 score = 24.39 sequence = ATGGGTATTCCGCTG... Gene: LJ1512: LSU ribosomal protein L19p |
*
Lactobacillus plantarum WCFS1 Site: position = -54 score = 35.3 sequence = CGATGTTCCGCTGAC... Gene: lp_1640: LSU ribosomal protein L19p |
*
Lactobacillus casei ATCC 334 Site: position = -54 score = 32.32 sequence = AACGACATTCCGCTG... Gene: LSEI_1597: LSU ribosomal protein L19p |
*
Lactobacillus brevis ATCC 367 Site: position = -58 score = 25.4 sequence = AACAACATTCCGCTG... Gene: LVIS_0939: LSU ribosomal protein L19p |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -56 score = 32.26 sequence = CGATATTCCGCTGGC... Gene: LSA0719: LSU ribosomal protein L19p |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -57 score = 20.47 sequence = CAATGTTCCGCTGGC... Gene: PEPE_0850: LSU ribosomal protein L19p |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -63 score = 25.53 sequence = CGATAATCCGCTGTG... Gene: LEUM_0607: LSU ribosomal protein L19p |
*
Lactobacillus rhamnosus GG Site: position = -54 score = 29.11 sequence = AACGGCATTCCGCTG... Gene: LGG_01639: LSU ribosomal protein L19p |
LSU ribosomal protein L19p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |