Regulog L13_leader - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | L13_leader |
| RFAM: | RF00555 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - L13_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 2 | 1 |
| Lactobacillus helveticus DPC 4571 | 2 | 1 |
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | 2 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 2 | 1 |
| Lactobacillus acidophilus NCFM | 2 | 1 |
| Lactobacillus johnsonii NCC 533 | 2 | 1 |
| Lactobacillus plantarum WCFS1 | 2 | 1 |
| Lactobacillus casei ATCC 334 | 2 | 1 |
| Lactobacillus brevis ATCC 367 | 2 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 2 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 2 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 2 | 1 |
| Lactobacillus rhamnosus GG | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rplM |
|
*
Lactobacillus reuteri JCM 1112 Site: position = -74 score = 19.94 sequence = TGGTATTTCTTTTCC... Gene: LAR_1362: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus helveticus DPC 4571 Site: position = -69 score = 46.64 sequence = GTATGTTTGTCCACG... Gene: lhv_0343: LSU ribosomal protein L13p (L13Ae) |
|
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -79 score = 46.85 sequence = TGGTATTGTTTGCCC... Gene: LSL_1403: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -121 score = 43.62 sequence = GTATGTTTGTCCACG... Gene: LBUL_0382: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus acidophilus NCFM Site: position = -69 score = 46.64 sequence = GTATGTTTGTCCACG... Gene: LBA0323: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus johnsonii NCC 533 Site: position = -70 score = 45.75 sequence = GTATGTTTGTCCACG... Gene: LJ0367: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus plantarum WCFS1 Site: position = -75 score = 58.14 sequence = GTATTGTTTGCCCCA... Gene: lp_1077: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus casei ATCC 334 Site: position = -77 score = 59.59 sequence = TGGTATTGTTTGCCC... Gene: LSEI_2463: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus brevis ATCC 367 Site: position = -78 score = 40.2 sequence = TGGTATTGTTTGCCC... Gene: LVIS_1658: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -77 score = 61.38 sequence = TGGTATTGTTTGCCC... Gene: LSA1722: LSU ribosomal protein L13p (L13Ae) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -82 score = 47.74 sequence = TGGTATTGTTTACCT... Gene: PEPE_1386: LSU ribosomal protein L13p (L13Ae) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -95 score = 55.2 sequence = GTATTGTTTACCTCA... Gene: LEUM_0230: LSU ribosomal protein L13p (L13Ae) |
*
Lactobacillus rhamnosus GG Site: position = -77 score = 59.59 sequence = TGGTATTGTTTGCCC... Gene: LGG_02448: LSU ribosomal protein L13p (L13Ae) |
LSU ribosomal protein L13p (L13Ae) |
| rpsI |
|
Gene: LAR_1361: SSU ribosomal protein S9p (S16e) |
Gene: lhv_0344: SSU ribosomal protein S9p (S16e) |
|
Gene: LSL_1402: SSU ribosomal protein S9p (S16e) |
Gene: LBUL_0383: SSU ribosomal protein S9p (S16e) |
Gene: LBA0324: SSU ribosomal protein S9p (S16e) |
Gene: LJ0368: SSU ribosomal protein S9p (S16e) |
Gene: lp_1078: SSU ribosomal protein S9p (S16e) |
Gene: LSEI_2462: SSU ribosomal protein S9p (S16e) |
Gene: LVIS_1657: SSU ribosomal protein S9p (S16e) |
Gene: LSA1721: SSU ribosomal protein S9p (S16e) |
Gene: PEPE_1385: SSU ribosomal protein S9p (S16e) |
Gene: LEUM_0231: SSU ribosomal protein S9p (S16e) |
Gene: LGG_02447: SSU ribosomal protein S9p (S16e) |
SSU ribosomal protein S9p (S16e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |