Regulog L10_leader - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rplJ |
*
Oenococcus oeni PSU-1 Site: position = -136 score = 38.28 sequence = AAAGTAAATATCGTT... Gene: OEOE_1417: 50S ribosomal protein L10 |
*
Lactobacillus reuteri JCM 1112 Site: position = -150 score = 75.61 sequence = GATTAAATATGACTC... Gene: LAR_0302: 50S ribosomal protein L10 |
*
Lactobacillus helveticus DPC 4571 Site: position = -163 score = 70.98 sequence = AATAACTGTAAATTC... Gene: lhv_0395: 50S ribosomal protein L10 |
*
Lactobacillus fermentum IFO 3956 Site: position = -148 score = 68.13 sequence = GATTAAATATGACTC... Gene: LAF_0271: 50S ribosomal protein L10 |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -156 score = 75.08 sequence = GGTCAAGTTAATAAT... Gene: LSL_1238: 50S ribosomal protein L10 |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -164 score = 69.35 sequence = AGATAAAGTAAATTT... Gene: LBUL_1537: 50S ribosomal protein L10 |
*
Lactobacillus acidophilus NCFM Site: position = -163 score = 70.24 sequence = GTTAATTGTAAATTC... Gene: LBA0369: 50S ribosomal protein L10 |
*
Lactobacillus johnsonii NCC 533 Site: position = -160 score = 78.93 sequence = TTGTACAGTAAATTC... Gene: LJ0415: 50S ribosomal protein L10 |
*
Lactobacillus plantarum WCFS1 Site: position = -142 score = 73.12 sequence = GTTAAGTAATATCTC... Gene: lp_0621: 50S ribosomal protein L10 |
*
Lactobacillus casei ATCC 334 Site: position = -156 score = 75.34 sequence = TTTGTGATCATTCAC... Gene: LSEI_2273: 50S ribosomal protein L10 |
*
Lactobacillus brevis ATCC 367 Site: position = -152 score = 76.66 sequence = AGTTATGAATTGATC... Gene: LVIS_0590: 50S ribosomal protein L10 |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -164 score = 79.09 sequence = TAGTTGGTTATTTAT... Gene: LSA1667: 50S ribosomal protein L10 |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -153 score = 60.92 sequence = ATTATAACTGAATAA... Gene: PEPE_1491: 50S ribosomal protein L10 |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -145 score = 68.39 sequence = TAATTGAATCCATTT... Gene: LEUM_0271: 50S ribosomal protein L10 |
*
Lactobacillus rhamnosus GG Site: position = -154 score = 73.67 sequence = GTTGTGATTAGTCAC... Gene: LGG_02277: 50S ribosomal protein L10 |
50S ribosomal protein L10 |
| rplL |
Gene: OEOE_1416: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LAR_0303: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: lhv_0396: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LAF_0272: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LSL_1237: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LBUL_1536: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LBA0370: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LJ0416: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: lp_0622: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LSEI_2272: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LVIS_0591: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LSA1666: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: PEPE_1490: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LEUM_0272: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: LGG_02276: LSU ribosomal protein L7/L12 (P1/P2) |
LSU ribosomal protein L7/L12 (P1/P2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |