Regulog LexA - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | 7 | 2 |
| Xanthomonas axonopodis pv. citri str. 306 | 3 | 1 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 5 | 2 |
| Stenotrophomonas maltophilia K279a | 6 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| imuA |
|
Gene: XAC1197: Predicted RecA/RadA recombinase |
Gene: XCC1099: Predicted RecA/RadA recombinase |
*
Stenotrophomonas maltophilia K279a Site: position = -145 score = 6.36845 sequence = TCATTAGTAATTCTACTCA Gene: Smlt2926: Predicted RecA/RadA recombinase |
Predicted RecA/RadA recombinase |
| imuB |
|
Gene: XAC1198: DNA polymerase-like protein PA0670 |
Gene: XCC1100: DNA polymerase-like protein PA0670 |
Gene: Smlt2927: DNA polymerase-like protein PA0670 |
DNA polymerase-like protein PA0670 |
| dnaE2 |
|
Gene: XAC1199: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: XCC1101: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Smlt2928: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 2. | |||||
| lexA |
*
Xylella fastidiosa 9a5c Site: position = 15 score = 6.79348 sequence = TTATTAGTAATAATACTAA Gene: XF0122: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -21 score = 7.01927 sequence = TTAGTAGTAATACTACTAA Gene: XAC1739: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -21 score = 7.01927 sequence = TTAGTAGTAATACTACTAA Gene: XCC1721: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Stenotrophomonas maltophilia K279a Site: position = 15 score = 7.01927 sequence = TTAGTAGTAATACTACTAA Gene: Smlt1740: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| recA |
Gene: XF0123: Recombinase A |
Gene: XAC1740: Recombinase A |
Gene: XCC1722: Recombinase A |
Gene: Smlt1741: Recombinase A |
Recombinase A |
| recX |
|
Gene: XAC1741: Regulatory protein RecX |
Gene: XCC1723: Regulatory protein RecX |
Gene: Smlt1742: Regulatory protein RecX |
Regulatory protein RecX |
| CRON 3. | |||||
| umuD |
|
|
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -69 score = 6.14266 sequence = TTTTTAGTAATTTTGCTAA Gene: XCC2963: DNA polymerase V, subunit UmuD |
|
DNA polymerase V, subunit UmuD |
| umuC |
|
|
Gene: XCC2964: DNA polymerase V, subunit UmuC |
Gene: Smlt3039: DNA polymerase V, subunit UmuC |
DNA polymerase V, subunit UmuC |
| CRON 4. | |||||
| XF2297 |
*
Xylella fastidiosa 9a5c Site: position = -140 score = 4.89697 sequence = GATTTAGTAAAATTACTAA Gene: XF2313: Adenine DNA methyltransferase, phage-associated |
|
|
|
Adenine DNA methyltransferase, phage-associated |
| XF1669 |
Gene: XF2314: Phage-related lysozyme |
|
|
|
Phage-related lysozyme |
| XF2315 |
Gene: XF2315: Hypothetical protein |
|
|
|
Hypothetical protein |
| XF2316 |
Gene: XF2316: Hypothetical protein |
|
|
|
Hypothetical protein |
| XF2317 |
Gene: XF2317: Hypothetical protein |
|
|
|
Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |