Regulog LexA - Xanthomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Xanthomonadales
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Statistics of regulated genes
Genome	Genes	Operons
Xylella fastidiosa 9a5c	7	2
Xanthomonas axonopodis pv. citri str. 306	3	1
Xanthomonas campestris pv. campestris str. ATCC 33913	5	2
Stenotrophomonas maltophilia K279a	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
imuA	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC1197: Predicted RecA/RadA recombinase	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC1099: Predicted RecA/RadA recombinase	* Stenotrophomonas maltophilia K279a Site: position = -145 score = 6.36845 sequence = TCATTAGTAATTCTACTCA Gene: Smlt2926: Predicted RecA/RadA recombinase	Predicted RecA/RadA recombinase
imuB	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC1198: DNA polymerase-like protein PA0670	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC1100: DNA polymerase-like protein PA0670	Stenotrophomonas maltophilia K279a Gene: Smlt2927: DNA polymerase-like protein PA0670	DNA polymerase-like protein PA0670
dnaE2	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC1199: DNA polymerase III alpha subunit (EC 2.7.7.7)	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC1101: DNA polymerase III alpha subunit (EC 2.7.7.7)	Stenotrophomonas maltophilia K279a Gene: Smlt2928: DNA polymerase III alpha subunit (EC 2.7.7.7)	DNA polymerase III alpha subunit (EC 2.7.7.7)

CRON 2.
lexA	* Xylella fastidiosa 9a5c Site: position = 15 score = 6.79348 sequence = TTATTAGTAATAATACTAA Gene: XF0122: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Xanthomonas axonopodis pv. citri str. 306 Site: position = -21 score = 7.01927 sequence = TTAGTAGTAATACTACTAA Gene: XAC1739: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -21 score = 7.01927 sequence = TTAGTAGTAATACTACTAA Gene: XCC1721: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Stenotrophomonas maltophilia K279a Site: position = 15 score = 7.01927 sequence = TTAGTAGTAATACTACTAA Gene: Smlt1740: SOS-response repressor and protease LexA (EC 3.4.21.88)	SOS-response repressor and protease LexA (EC 3.4.21.88)
recA	Xylella fastidiosa 9a5c Gene: XF0123: Recombinase A	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC1740: Recombinase A	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC1722: Recombinase A	Stenotrophomonas maltophilia K279a Gene: Smlt1741: Recombinase A	Recombinase A
recX	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC1741: Regulatory protein RecX	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC1723: Regulatory protein RecX	Stenotrophomonas maltophilia K279a Gene: Smlt1742: Regulatory protein RecX	Regulatory protein RecX

CRON 3.
umuD	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -69 score = 6.14266 sequence = TTTTTAGTAATTTTGCTAA Gene: XCC2963: DNA polymerase V, subunit UmuD	Stenotrophomonas maltophilia K279a	DNA polymerase V, subunit UmuD
umuC	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC2964: DNA polymerase V, subunit UmuC	Stenotrophomonas maltophilia K279a Gene: Smlt3039: DNA polymerase V, subunit UmuC	DNA polymerase V, subunit UmuC

CRON 4.
XF2297	* Xylella fastidiosa 9a5c Site: position = -140 score = 4.89697 sequence = GATTTAGTAAAATTACTAA Gene: XF2313: Adenine DNA methyltransferase, phage-associated	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a	Adenine DNA methyltransferase, phage-associated
XF1669	Xylella fastidiosa 9a5c Gene: XF2314: Phage-related lysozyme	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a	Phage-related lysozyme
XF2315	Xylella fastidiosa 9a5c Gene: XF2315: Hypothetical protein	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a	Hypothetical protein
XF2316	Xylella fastidiosa 9a5c Gene: XF2316: Hypothetical protein	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a	Hypothetical protein
XF2317	Xylella fastidiosa 9a5c Gene: XF2317: Hypothetical protein	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LexA - Xanthomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --