Regulog T-box(Tyr) - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Tyr-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - T-box
By effector - Tyr-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	2	2
Bacillus amyloliquefaciens FZB42	1	1
Bacillus pumilus SAFR-032	1	1
Bacillus licheniformis DSM 13	2	2
Anoxybacillus flavithermus WK1	1	1
Geobacillus kaustophilus HTA426	1	1
Bacillus cereus ATCC 14579	10	6
Bacillus halodurans C-125	1	1
Bacillus clausii KSM-K16	1	1
Oceanobacillus iheyensis HTE831	2	2
Paenibacillus sp. JDR-2	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
tyrS	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -288 score = 121.31 sequence = TGAAAAGGTAAAGAT... Gene: BSU29670: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Bacillus amyloliquefaciens FZB42 Site: position = -284 score = 132.78 sequence = CGAAAAGGTTTTGAT... Gene: RBAM_026790: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Bacillus pumilus SAFR-032 Site: position = -292 score = 133.13 sequence = TATAAAGGTTTTGAC... Gene: BPUM_2615: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Bacillus licheniformis DSM 13 Site: position = -286 score = 125.35 sequence = TCAAAAGGTGAAGAC... Gene: BLi03118: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Anoxybacillus flavithermus WK1 Site: position = -244 score = 153.27 sequence = ATCGAGCGATGAGCG... Gene: Aflv_0464: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Geobacillus kaustophilus HTA426 Site: position = -276 score = 138.84 sequence = TGAGAAAGCGATGAT... Gene: GK2803: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	2 Bacillus cereus ATCC 14579* Site: position = -268 score = 110.07 sequence = ATAACATACGTTGAA... Gene: BC5062: Tyrosyl-tRNA synthetase (EC 6.1.1.1) Site: position = -301 score = 136.58 sequence = TAATTGAGCGTGGAA... Gene: BC4657: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -264 score = 112.78 sequence = CTTAAATACGAAGAA... Gene: OB2218: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Paenibacillus sp. JDR-2 Site: position = -289 score = 97.0 sequence = CTTATGCGGCGAAAG... Gene: Pjdr2_1515: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Tyrosyl-tRNA synthetase (EC 6.1.1.1)

CRON 2.
tyrZ	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -253 score = 136.48 sequence = CATAAGCTTTGACGG... Gene: BSU38460: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -262 score = 139.4 sequence = ACCATAAGCAACGAC... Gene: BLi00666: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -282 score = 117.22 sequence = ATATTGAGCGTTGAA... Gene: BH3228: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	* Bacillus clausii KSM-K16 Site: position = -248 score = 110.08 sequence = TAAAAAAGCGAGGAA... Gene: ABC2758: Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Tyrosyl-tRNA synthetase (EC 6.1.1.1)

CRON 3.
aroF	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22710: Chorismate synthase (EC 4.2.3.5) # AroG	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020870: Chorismate synthase (EC 4.2.3.5) # AroG	Bacillus pumilus SAFR-032 Gene: BPUM_2002: Chorismate synthase (EC 4.2.3.5) # AroG	Bacillus licheniformis DSM 13 Gene: BLi02406: Chorismate synthase (EC 4.2.3.5) # AroG	Anoxybacillus flavithermus WK1 Gene: Aflv_1098: Chorismate synthase (EC 4.2.3.5) # AroG	Geobacillus kaustophilus HTA426 Gene: GK2207: Chorismate synthase (EC 4.2.3.5) # AroG	2 Bacillus cereus ATCC 14579* Site: position = -274 score = 158.57 sequence = CATATATGCGTTGAA... Gene: BC2941: Chorismate synthase (EC 4.2.3.5) # AroG Gene: BC1516: Chorismate synthase (EC 4.2.3.5) # AroG	Bacillus halodurans C-125 Gene: BH1656: Chorismate synthase (EC 4.2.3.5) # AroG	Bacillus clausii KSM-K16 Gene: ABC1892: Chorismate synthase (EC 4.2.3.5) # AroG	Oceanobacillus iheyensis HTE831 Gene: OB1785: Chorismate synthase (EC 4.2.3.5) # AroG	Paenibacillus sp. JDR-2 Gene: Pjdr2_2031: Chorismate synthase (EC 4.2.3.5) # AroG	Chorismate synthase (EC 4.2.3.5) # AroG
hisC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22620: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020780: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Bacillus pumilus SAFR-032 Gene: BPUM_1993: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Bacillus licheniformis DSM 13 Gene: BLi02397: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Anoxybacillus flavithermus WK1 Gene: Aflv_1107: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Geobacillus kaustophilus HTA426 Gene: GK2198: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Bacillus cereus ATCC 14579 Gene: BC2940: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9)
tyrA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22610: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020770: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Bacillus pumilus SAFR-032 Gene: BPUM_1992: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Bacillus licheniformis DSM 13 Gene: BLi02396: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Anoxybacillus flavithermus WK1 Gene: Aflv_1108: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Geobacillus kaustophilus HTA426 Gene: GK2197: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Bacillus cereus ATCC 14579 Gene: BC2939: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Bacillus halodurans C-125 Gene: BH1666: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Bacillus clausii KSM-K16 Gene: ABC1902: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Oceanobacillus iheyensis HTE831 Gene: OB1781: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific	Paenibacillus sp. JDR-2	Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific
aroE	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22600: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020760: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Bacillus pumilus SAFR-032 Gene: BPUM_1991: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Bacillus licheniformis DSM 13 Gene: BLi02395: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Anoxybacillus flavithermus WK1 Gene: Aflv_1109: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Geobacillus kaustophilus HTA426 Gene: GK2196: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Bacillus cereus ATCC 14579 Gene: BC2938: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	2 Bacillus halodurans C-125 Gene: BH2713: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF Gene: BH1667: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	2 Bacillus clausii KSM-K16 Gene: ABC1221: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF Gene: ABC1903: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Oceanobacillus iheyensis HTE831 Gene: OB1780: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF	Paenibacillus sp. JDR-2	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF

CRON 4.
phhA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -390 score = 140.3 sequence = TATACGCGTTGAAAG... Gene: BC4352: Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long
phs	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1984: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Bacillus cereus ATCC 14579 Gene: BC4353: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC4006: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)

CRON 5.
aroA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -430 score = 139.89 sequence = TAGTCATGCATTGAA... Gene: BC2942: Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroH/AroAI beta	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroH/AroAI beta

CRON 6.
tyrT	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -223 score = 25.8 sequence = GTGATACATTCATTT... Gene: BC4121: Predicted tyrosine transporter, NhaC family	Bacillus halodurans C-125	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -220 score = 75.24 sequence = ACAATTAGAGATTCG... Gene: OB1118: Predicted tyrosine transporter, NhaC family	Paenibacillus sp. JDR-2	Predicted tyrosine transporter, NhaC family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Tyr) - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --