Regulog T-box(Tyr) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Tyr-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Tyr-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 2 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 2 | 2 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 10 | 6 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 2 | 2 |
| Paenibacillus sp. JDR-2 | 1 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| tyrS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -288 score = 121.31 sequence = TGAAAAGGTAAAGAT... Gene: BSU29670: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -284 score = 132.78 sequence = CGAAAAGGTTTTGAT... Gene: RBAM_026790: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Bacillus pumilus SAFR-032 Site: position = -292 score = 133.13 sequence = TATAAAGGTTTTGAC... Gene: BPUM_2615: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Bacillus licheniformis DSM 13 Site: position = -286 score = 125.35 sequence = TCAAAAGGTGAAGAC... Gene: BLi03118: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Anoxybacillus flavithermus WK1 Site: position = -244 score = 153.27 sequence = ATCGAGCGATGAGCG... Gene: Aflv_0464: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Geobacillus kaustophilus HTA426 Site: position = -276 score = 138.84 sequence = TGAGAAAGCGATGAT... Gene: GK2803: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*2
Bacillus cereus ATCC 14579 Site: position = -268 score = 110.07 sequence = ATAACATACGTTGAA... Gene: BC5062: Tyrosyl-tRNA synthetase (EC 6.1.1.1) Site: position = -301 score = 136.58 sequence = TAATTGAGCGTGGAA... Gene: BC4657: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
|
|
*
Oceanobacillus iheyensis HTE831 Site: position = -264 score = 112.78 sequence = CTTAAATACGAAGAA... Gene: OB2218: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Paenibacillus sp. JDR-2 Site: position = -289 score = 97.0 sequence = CTTATGCGGCGAAAG... Gene: Pjdr2_1515: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
| CRON 2. | ||||||||||||
| tyrZ |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -253 score = 136.48 sequence = CATAAGCTTTGACGG... Gene: BSU38460: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
|
|
*
Bacillus licheniformis DSM 13 Site: position = -262 score = 139.4 sequence = ACCATAAGCAACGAC... Gene: BLi00666: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
|
|
|
*
Bacillus halodurans C-125 Site: position = -282 score = 117.22 sequence = ATATTGAGCGTTGAA... Gene: BH3228: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
*
Bacillus clausii KSM-K16 Site: position = -248 score = 110.08 sequence = TAAAAAAGCGAGGAA... Gene: ABC2758: Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
|
|
Tyrosyl-tRNA synthetase (EC 6.1.1.1) |
| CRON 3. | ||||||||||||
| aroF |
Gene: BSU22710: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: RBAM_020870: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: BPUM_2002: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: BLi02406: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: Aflv_1098: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: GK2207: Chorismate synthase (EC 4.2.3.5) # AroG |
*2
Bacillus cereus ATCC 14579 Site: position = -274 score = 158.57 sequence = CATATATGCGTTGAA... Gene: BC2941: Chorismate synthase (EC 4.2.3.5) # AroG Gene: BC1516: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: BH1656: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: ABC1892: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: OB1785: Chorismate synthase (EC 4.2.3.5) # AroG |
Gene: Pjdr2_2031: Chorismate synthase (EC 4.2.3.5) # AroG |
Chorismate synthase (EC 4.2.3.5) # AroG |
| hisC |
Gene: BSU22620: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
Gene: RBAM_020780: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
Gene: BPUM_1993: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
Gene: BLi02397: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
Gene: Aflv_1107: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
Gene: GK2198: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
Gene: BC2940: Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
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Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) |
| tyrA |
Gene: BSU22610: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: RBAM_020770: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: BPUM_1992: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: BLi02396: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: Aflv_1108: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: GK2197: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: BC2939: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: BH1666: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: ABC1902: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
Gene: OB1781: Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
|
Prephenate dehydrogenase (EC 1.3.1.12) # TyrAp/ACT domain, NAD-specific |
| aroE |
Gene: BSU22600: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: RBAM_020760: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: BPUM_1991: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: BLi02395: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: Aflv_1109: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: GK2196: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: BC2938: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
2
Bacillus halodurans C-125 Gene: BH2713: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF Gene: BH1667: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
2
Bacillus clausii KSM-K16 Gene: ABC1221: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF Gene: ABC1903: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
Gene: OB1780: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
|
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) # AroF |
| CRON 4. | ||||||||||||
| phhA |
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*
Bacillus cereus ATCC 14579 Site: position = -390 score = 140.3 sequence = TATACGCGTTGAAAG... Gene: BC4352: Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long |
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Phenylalanine-4-hydroxylase (EC 1.14.16.1) - Long |
| phs |
|
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Gene: GK1984: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: BC4353: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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Gene: ABC4006: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
| CRON 5. | ||||||||||||
| aroA |
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|
*
Bacillus cereus ATCC 14579 Site: position = -430 score = 139.89 sequence = TAGTCATGCATTGAA... Gene: BC2942: Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroH/AroAI beta |
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Chorismate mutase I (EC 5.4.99.5) / 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroH/AroAI beta |
| CRON 6. | ||||||||||||
| tyrT |
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*
Bacillus cereus ATCC 14579 Site: position = -223 score = 25.8 sequence = GTGATACATTCATTT... Gene: BC4121: Predicted tyrosine transporter, NhaC family |
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*
Oceanobacillus iheyensis HTE831 Site: position = -220 score = 75.24 sequence = ACAATTAGAGATTCG... Gene: OB1118: Predicted tyrosine transporter, NhaC family |
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Predicted tyrosine transporter, NhaC family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |