Regulog T-box(Trp) - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Trp-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - T-box
By effector - Trp-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	3	2
Bacillus amyloliquefaciens FZB42	1	1
Bacillus pumilus SAFR-032	1	1
Bacillus licheniformis DSM 13	3	2
Anoxybacillus flavithermus WK1	1	1
Geobacillus kaustophilus HTA426	1	1
Bacillus cereus ATCC 14579	9	3
Bacillus halodurans C-125	1	1
Bacillus clausii KSM-K16	1	1
Oceanobacillus iheyensis HTE831	8	2
Paenibacillus sp. JDR-2	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
trpS	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -274 score = 135.96 sequence = AAAGCTTGCTATGAA... Gene: BSU11420: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	* Bacillus amyloliquefaciens FZB42 Site: position = -268 score = 120.77 sequence = TGTGATTGCGATGAT... Gene: RBAM_011420: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	* Bacillus pumilus SAFR-032 Site: position = -273 score = 126.75 sequence = TACTGTTGCGATGAA... Gene: BPUM_1068: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	* Bacillus licheniformis DSM 13 Site: position = -275 score = 136.94 sequence = ATAACATGCGATGAA... Gene: BLi01231: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	2 Anoxybacillus flavithermus WK1* Site: position = -274 score = 141.07 sequence = CCGATGCGATGACGA... Gene: Aflv_2135: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Gene: Aflv_2446: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	* Geobacillus kaustophilus HTA426 Site: position = -286 score = 125.28 sequence = CAACCGAGCGATGAG... Gene: GK0809: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	* Bacillus cereus ATCC 14579 Site: position = -253 score = 136.38 sequence = CGAAAAAGCAATGAA... Gene: BC3340: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	2 Bacillus halodurans C-125* Gene: BH2870: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Site: position = -404 score = 119.89 sequence = TATGTTTGCAATGAT... Gene: BH2200: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	2 Bacillus clausii KSM-K16* Site: position = -306 score = 115.24 sequence = TTTAAGCGATGAAGA... Gene: ABC0274: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Gene: ABC2535: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	* Oceanobacillus iheyensis HTE831 Site: position = -228 score = 98.32 sequence = ATACGAAGCATTGAA... Gene: OB1208: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	2 Paenibacillus sp. JDR-2* Site: position = -311 score = 124.88 sequence = AACTTGCGATGATGA... Gene: Pjdr2_1924: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Site: position = -339 score = 89.33 sequence = ACGAAATGCGATGAA... Gene: Pjdr2_4883: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)

CRON 2.
trpE	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22680: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020840: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Bacillus pumilus SAFR-032 Gene: BPUM_1999: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Bacillus licheniformis DSM 13 Gene: BLi02403: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Anoxybacillus flavithermus WK1 Gene: Aflv_1101: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Geobacillus kaustophilus HTA426 Gene: GK2204: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	* Bacillus cereus ATCC 14579 Site: position = -286 score = 120.69 sequence = TGAAATCGTTTAAGT... Gene: BC1232: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Bacillus halodurans C-125 Gene: BH1659: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Bacillus clausii KSM-K16 Gene: ABC1895: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	* Oceanobacillus iheyensis HTE831 Site: position = -322 score = 135.73 sequence = TGCAAAATCATTGAG... Gene: OB0527: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Paenibacillus sp. JDR-2 Gene: Pjdr2_2417: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa	Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
trpG	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC1233: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB0526: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb	Paenibacillus sp. JDR-2	Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
trpD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22670: anthranilate phosphoribosyltransferase	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020830: anthranilate phosphoribosyltransferase	Bacillus pumilus SAFR-032 Gene: BPUM_1998: anthranilate phosphoribosyltransferase	Bacillus licheniformis DSM 13 Gene: BLi02402: anthranilate phosphoribosyltransferase	Anoxybacillus flavithermus WK1 Gene: Aflv_1102: anthranilate phosphoribosyltransferase	Geobacillus kaustophilus HTA426 Gene: GK2203: anthranilate phosphoribosyltransferase	Bacillus cereus ATCC 14579 Gene: BC1234: anthranilate phosphoribosyltransferase	Bacillus halodurans C-125 Gene: BH1660: anthranilate phosphoribosyltransferase	Bacillus clausii KSM-K16 Gene: ABC1896: anthranilate phosphoribosyltransferase	Oceanobacillus iheyensis HTE831 Gene: OB0525: anthranilate phosphoribosyltransferase	Paenibacillus sp. JDR-2 Gene: Pjdr2_2418: anthranilate phosphoribosyltransferase	anthranilate phosphoribosyltransferase
trpC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22660: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020820: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Bacillus pumilus SAFR-032 Gene: BPUM_1997: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Bacillus licheniformis DSM 13 Gene: BLi02401: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Anoxybacillus flavithermus WK1 Gene: Aflv_1103: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Geobacillus kaustophilus HTA426 Gene: GK2202: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Bacillus cereus ATCC 14579 Gene: BC1235: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Bacillus halodurans C-125 Gene: BH1661: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Bacillus clausii KSM-K16 Gene: ABC1897: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Oceanobacillus iheyensis HTE831 Gene: OB0524: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2419: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
trpF	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22650: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020810: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Bacillus pumilus SAFR-032 Gene: BPUM_1996: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Bacillus licheniformis DSM 13 Gene: BLi02400: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Anoxybacillus flavithermus WK1 Gene: Aflv_1104: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Geobacillus kaustophilus HTA426 Gene: GK2201: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Bacillus cereus ATCC 14579 Gene: BC1236: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Bacillus halodurans C-125 Gene: BH1662: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Bacillus clausii KSM-K16 Gene: ABC1898: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Oceanobacillus iheyensis HTE831 Gene: OB0523: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2420: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
trpB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22640: Tryptophan synthase beta chain (EC 4.2.1.20)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020800: Tryptophan synthase beta chain (EC 4.2.1.20)	Bacillus pumilus SAFR-032 Gene: BPUM_1995: Tryptophan synthase beta chain (EC 4.2.1.20)	Bacillus licheniformis DSM 13 Gene: BLi02399: Tryptophan synthase beta chain (EC 4.2.1.20)	Anoxybacillus flavithermus WK1 Gene: Aflv_1105: Tryptophan synthase beta chain (EC 4.2.1.20)	Geobacillus kaustophilus HTA426 Gene: GK2200: Tryptophan synthase beta chain (EC 4.2.1.20)	Bacillus cereus ATCC 14579 Gene: BC1237: Tryptophan synthase beta chain (EC 4.2.1.20)	Bacillus halodurans C-125 Gene: BH1663: Tryptophan synthase beta chain (EC 4.2.1.20)	Bacillus clausii KSM-K16 Gene: ABC1899: Tryptophan synthase beta chain (EC 4.2.1.20)	Oceanobacillus iheyensis HTE831 Gene: OB0522: Tryptophan synthase beta chain (EC 4.2.1.20)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2421: Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan synthase beta chain (EC 4.2.1.20)
trpA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU22630: Tryptophan synthase alpha chain (EC 4.2.1.20)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020790: Tryptophan synthase alpha chain (EC 4.2.1.20)	Bacillus pumilus SAFR-032 Gene: BPUM_1994: Tryptophan synthase alpha chain (EC 4.2.1.20)	Bacillus licheniformis DSM 13 Gene: BLi02398: Tryptophan synthase alpha chain (EC 4.2.1.20)	Anoxybacillus flavithermus WK1 Gene: Aflv_1106: Tryptophan synthase alpha chain (EC 4.2.1.20)	Geobacillus kaustophilus HTA426 Gene: GK2199: Tryptophan synthase alpha chain (EC 4.2.1.20)	Bacillus cereus ATCC 14579 Gene: BC1238: Tryptophan synthase alpha chain (EC 4.2.1.20)	Bacillus halodurans C-125 Gene: BH1664: Tryptophan synthase alpha chain (EC 4.2.1.20)	Bacillus clausii KSM-K16 Gene: ABC1900: Tryptophan synthase alpha chain (EC 4.2.1.20)	Oceanobacillus iheyensis HTE831 Gene: OB0521: Tryptophan synthase alpha chain (EC 4.2.1.20)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2422: Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan synthase alpha chain (EC 4.2.1.20)

CRON 3.
rtpA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -344 score = 122.26 sequence = TAACAATCGTGAGGA... Gene: BSU02530: Anti-TRAP regulator	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -357 score = 123.37 sequence = AAACGATATTGAAGA... Gene: BLi00308: Anti-TRAP regulator	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Anti-TRAP regulator
ycbK	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU02540: Permeases of the drug/metabolite transporter (DMT) superfamily	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00309: Permeases of the drug/metabolite transporter (DMT) superfamily	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Permeases of the drug/metabolite transporter (DMT) superfamily

CRON 4.
yhdH	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -356 score = 111.09 sequence = TGAAATCGATGAGCA... Gene: BC1430: Sodium-dependent tryptophan transporter	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Sodium-dependent tryptophan transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Trp) - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --