Regulog T-box(Trp) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Trp-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Trp-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 2 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 3 | 2 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 9 | 3 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 8 | 2 |
| Paenibacillus sp. JDR-2 | 2 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| trpS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -274 score = 135.96 sequence = AAAGCTTGCTATGAA... Gene: BSU11420: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -268 score = 120.77 sequence = TGTGATTGCGATGAT... Gene: RBAM_011420: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*
Bacillus pumilus SAFR-032 Site: position = -273 score = 126.75 sequence = TACTGTTGCGATGAA... Gene: BPUM_1068: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*
Bacillus licheniformis DSM 13 Site: position = -275 score = 136.94 sequence = ATAACATGCGATGAA... Gene: BLi01231: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*2
Anoxybacillus flavithermus WK1 Site: position = -274 score = 141.07 sequence = CCGATGCGATGACGA... Gene: Aflv_2135: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Gene: Aflv_2446: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*
Geobacillus kaustophilus HTA426 Site: position = -286 score = 125.28 sequence = CAACCGAGCGATGAG... Gene: GK0809: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*
Bacillus cereus ATCC 14579 Site: position = -253 score = 136.38 sequence = CGAAAAAGCAATGAA... Gene: BC3340: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*2
Bacillus halodurans C-125 Gene: BH2870: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Site: position = -404 score = 119.89 sequence = TATGTTTGCAATGAT... Gene: BH2200: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*2
Bacillus clausii KSM-K16 Site: position = -306 score = 115.24 sequence = TTTAAGCGATGAAGA... Gene: ABC0274: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Gene: ABC2535: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*
Oceanobacillus iheyensis HTE831 Site: position = -228 score = 98.32 sequence = ATACGAAGCATTGAA... Gene: OB1208: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
*2
Paenibacillus sp. JDR-2 Site: position = -311 score = 124.88 sequence = AACTTGCGATGATGA... Gene: Pjdr2_1924: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) Site: position = -339 score = 89.33 sequence = ACGAAATGCGATGAA... Gene: Pjdr2_4883: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
Tryptophanyl-tRNA synthetase (EC 6.1.1.2) |
| CRON 2. | ||||||||||||
| trpE |
Gene: BSU22680: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: RBAM_020840: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: BPUM_1999: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: BLi02403: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: Aflv_1101: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: GK2204: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Bacillus cereus ATCC 14579 Site: position = -286 score = 120.69 sequence = TGAAATCGTTTAAGT... Gene: BC1232: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: BH1659: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: ABC1895: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Oceanobacillus iheyensis HTE831 Site: position = -322 score = 135.73 sequence = TGCAAAATCATTGAG... Gene: OB0527: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: Pjdr2_2417: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
| trpG |
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Gene: BC1233: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
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Gene: OB0526: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
|
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
| trpD |
Gene: BSU22670: anthranilate phosphoribosyltransferase |
Gene: RBAM_020830: anthranilate phosphoribosyltransferase |
Gene: BPUM_1998: anthranilate phosphoribosyltransferase |
Gene: BLi02402: anthranilate phosphoribosyltransferase |
Gene: Aflv_1102: anthranilate phosphoribosyltransferase |
Gene: GK2203: anthranilate phosphoribosyltransferase |
Gene: BC1234: anthranilate phosphoribosyltransferase |
Gene: BH1660: anthranilate phosphoribosyltransferase |
Gene: ABC1896: anthranilate phosphoribosyltransferase |
Gene: OB0525: anthranilate phosphoribosyltransferase |
Gene: Pjdr2_2418: anthranilate phosphoribosyltransferase |
anthranilate phosphoribosyltransferase |
| trpC |
Gene: BSU22660: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: RBAM_020820: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: BPUM_1997: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: BLi02401: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: Aflv_1103: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: GK2202: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: BC1235: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: BH1661: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: ABC1897: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: OB0524: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: Pjdr2_2419: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
| trpF |
Gene: BSU22650: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: RBAM_020810: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: BPUM_1996: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: BLi02400: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Aflv_1104: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: GK2201: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: BC1236: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: BH1662: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: ABC1898: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: OB0523: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Pjdr2_2420: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
| trpB |
Gene: BSU22640: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: RBAM_020800: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: BPUM_1995: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: BLi02399: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Aflv_1105: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: GK2200: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: BC1237: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: BH1663: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: ABC1899: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: OB0522: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Pjdr2_2421: Tryptophan synthase beta chain (EC 4.2.1.20) |
Tryptophan synthase beta chain (EC 4.2.1.20) |
| trpA |
Gene: BSU22630: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: RBAM_020790: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: BPUM_1994: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: BLi02398: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Aflv_1106: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: GK2199: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: BC1238: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: BH1664: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: ABC1900: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: OB0521: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Pjdr2_2422: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Tryptophan synthase alpha chain (EC 4.2.1.20) |
| CRON 3. | ||||||||||||
| rtpA |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -344 score = 122.26 sequence = TAACAATCGTGAGGA... Gene: BSU02530: Anti-TRAP regulator |
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*
Bacillus licheniformis DSM 13 Site: position = -357 score = 123.37 sequence = AAACGATATTGAAGA... Gene: BLi00308: Anti-TRAP regulator |
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Anti-TRAP regulator |
| ycbK |
Gene: BSU02540: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Gene: BLi00309: Permeases of the drug/metabolite transporter (DMT) superfamily |
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Permeases of the drug/metabolite transporter (DMT) superfamily |
| CRON 4. | ||||||||||||
| yhdH |
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*
Bacillus cereus ATCC 14579 Site: position = -356 score = 111.09 sequence = TGAAATCGATGAGCA... Gene: BC1430: Sodium-dependent tryptophan transporter |
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Sodium-dependent tryptophan transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |