Regulog T-box(Trp) - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Trp-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - T-box
- By effector - Trp-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 7 | 1 |
| Staphylococcus capitis SK14 | 7 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 7 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 7 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 7 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 7 | 1 |
| Macrococcus caseolyticus JCSC5402 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| trpE |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -432 score = 70.61 sequence = AGAATTTTCTAAAGA... Site: position = -228 score = 66.62 sequence = TTTAGACAAAATGTA... Gene: SA1199: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Staphylococcus capitis SK14 Site: position = -419 score = 63.55 sequence = TAATTTGAATGAATA... Site: position = -220 score = 62.59 sequence = TTTAAGCAAAATGTA... Gene: STACA0001_1613: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -412 score = 62.24 sequence = TAATTTGATTGATAG... Site: position = -220 score = 66.05 sequence = TTGAAGCAAAGTGAA... Gene: SE1048: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -227 score = 74.73 sequence = ATGAGATAAAATGAA... Gene: Sca_1012: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -233 score = 63.65 sequence = TAAATAGGCATAAAT... Site: position = -446 score = 62.95 sequence = AAACAATTCTATGAA... Gene: SH1542: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -233 score = 70.63 sequence = TTAGAAAACAAAATG... Gene: SSP1379: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
|
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
| trpG |
Gene: SA1200: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: STACA0001_1614: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: SE1049: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sca_1013: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: SH1541: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: SSP1378: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
|
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
| trpD |
Gene: SA1201: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: STACA0001_1615: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: SE1050: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sca_1014: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: SH1540: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: SSP1377: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
|
Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
| trpC |
Gene: SA1202: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: STACA0001_1616: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: SE1051: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: Sca_1015: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: SH1539: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: SSP1376: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
|
Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
| trpF |
Gene: SA1203: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: STACA0001_1617: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: SE1052: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sca_1016: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: SH1538: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: SSP1375: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
|
Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
| trpB |
Gene: SA1204: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: STACA0001_1618: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: SE1053: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sca_1017: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: SH1537: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: SSP1374: Tryptophan synthase beta chain (EC 4.2.1.20) |
|
Tryptophan synthase beta chain (EC 4.2.1.20) |
| trpA |
Gene: SA1205: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: STACA0001_1619: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: SE1054: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sca_1018: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: SH1536: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: SSP1373: Tryptophan synthase alpha chain (EC 4.2.1.20) |
|
Tryptophan synthase alpha chain (EC 4.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |