Regulog T-box(Thr) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Thr-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Thr-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 2 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 2 |
| Bacillus licheniformis DSM 13 | 2 | 2 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 7 | 5 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 2 | 2 |
| Oceanobacillus iheyensis HTE831 | 1 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| thrS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -292 score = 91.49 sequence = GACACACGTATTGAT... Gene: BSU28950: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -299 score = 80.46 sequence = GCTACACGTATTGAT... Gene: RBAM_025990: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus pumilus SAFR-032 Site: position = -294 score = 94.5 sequence = AGAGACCGTATTGAT... Gene: BPUM_2539: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus licheniformis DSM 13 Site: position = -301 score = 82.73 sequence = ATATCATGTATTGAT... Gene: BLi03043: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Anoxybacillus flavithermus WK1 Site: position = -291 score = 92.97 sequence = CAAAAGTGATGATGA... Gene: Aflv_0521: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Geobacillus kaustophilus HTA426 Site: position = -291 score = 95.93 sequence = AATACAAGCGATGAC... Gene: GK2719: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus cereus ATCC 14579 Site: position = -274 score = 103.13 sequence = TTGAAATGTCATGAT... Gene: BC4576: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus halodurans C-125 Site: position = -304 score = 108.43 sequence = TTAAATGGTTATGAT... Gene: BH3141: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus clausii KSM-K16 Site: position = -253 score = 73.78 sequence = ATGAAAAGTGATGAT... Gene: ABC2697: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Oceanobacillus iheyensis HTE831 Site: position = -279 score = 106.65 sequence = ATTATTCGTGATGAT... Gene: OB2154: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Paenibacillus sp. JDR-2 Site: position = -336 score = 79.32 sequence = GCAAAAAGCAATGAC... Gene: Pjdr2_4792: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Threonyl-tRNA synthetase (EC 6.1.1.3) |
| CRON 2. | ||||||||||||
| thrZ |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -276 score = 106.0 sequence = AATACATGCGATGAA... Gene: BSU37560: Threonyl-tRNA synthetase (EC 6.1.1.3) |
|
*
Bacillus pumilus SAFR-032 Site: position = -266 score = 99.06 sequence = TCATTGCTTTGAAAA... Gene: BPUM_0761: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Bacillus licheniformis DSM 13 Site: position = -322 score = 100.11 sequence = TAAAGGTTGTGAAAG... Gene: BLi00234: Threonyl-tRNA synthetase (EC 6.1.1.3) |
|
|
*
Bacillus cereus ATCC 14579 Site: position = -265 score = 100.26 sequence = AATAAGCGAAGAAAA... Gene: BC2322: Threonyl-tRNA synthetase (EC 6.1.1.3) |
|
*
Bacillus clausii KSM-K16 Site: position = -280 score = 109.87 sequence = AGCAAGAGCGATGAA... Gene: ABC3978: Threonyl-tRNA synthetase (EC 6.1.1.3) |
|
*
Paenibacillus sp. JDR-2 Site: position = -307 score = 68.75 sequence = CGAAGGCAATGACCA... Gene: Pjdr2_1002: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Threonyl-tRNA synthetase (EC 6.1.1.3) |
| CRON 3. | ||||||||||||
| hom |
Gene: BSU32260: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: RBAM_029370: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: BPUM_2888: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: BLi03414: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: Aflv_2414: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: GK2964: Homoserine dehydrogenase (EC 1.1.1.3) |
*
Bacillus cereus ATCC 14579 Site: position = -385 score = 114.61 sequence = AAAAAGTAATGATAA... Gene: BC1964: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: BH3422: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: ABC2942: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: OB0466: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: Pjdr2_4407: Homoserine dehydrogenase (EC 1.1.1.3) |
Homoserine dehydrogenase (EC 1.1.1.3) |
| thrC |
Gene: BSU32250: Threonine synthase (EC 4.2.3.1) |
Gene: RBAM_029360: Threonine synthase (EC 4.2.3.1) |
Gene: BPUM_2887: Threonine synthase (EC 4.2.3.1) |
Gene: BLi03413: Threonine synthase (EC 4.2.3.1) |
Gene: Aflv_2413: Threonine synthase (EC 4.2.3.1) |
Gene: GK2963: Threonine synthase (EC 4.2.3.1) |
Gene: BC1965: Threonine synthase (EC 4.2.3.1) |
Gene: BH3421: Threonine synthase (EC 4.2.3.1) |
Gene: ABC2941: Threonine synthase (EC 4.2.3.1) |
Gene: OB0465: Threonine synthase (EC 4.2.3.1) |
|
Threonine synthase (EC 4.2.3.1) |
| thrB |
Gene: BSU32240: Homoserine kinase (EC 2.7.1.39) |
Gene: RBAM_029350: Homoserine kinase (EC 2.7.1.39) |
Gene: BPUM_2886: Homoserine kinase (EC 2.7.1.39) |
Gene: BLi03412: Homoserine kinase (EC 2.7.1.39) |
Gene: Aflv_2412: Homoserine kinase (EC 2.7.1.39) |
Gene: GK2962: Homoserine kinase (EC 2.7.1.39) |
Gene: BC1966: Homoserine kinase (EC 2.7.1.39) |
Gene: BH3420: Homoserine kinase (EC 2.7.1.39) |
Gene: ABC2940: Homoserine kinase (EC 2.7.1.39) |
Gene: OB0464: Homoserine kinase (EC 2.7.1.39) |
Gene: Pjdr2_4406: Homoserine kinase (EC 2.7.1.39) |
Homoserine kinase (EC 2.7.1.39) |
| CRON 4. | ||||||||||||
| ykbA |
Gene: BSU12860: Amino acid transporter |
Gene: RBAM_012710: Amino acid transporter |
Gene: BPUM_1179: Amino acid transporter |
Gene: BLi01387: Amino acid transporter |
Gene: Aflv_1288: Amino acid transporter |
|
*
Bacillus cereus ATCC 14579 Site: position = -303 score = 104.88 sequence = TCAAGAAGTGATGAT... Gene: BC5013: Amino acid transporter |
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Amino acid transporter |
| CRON 5. | ||||||||||||
| brnQ |
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*
Bacillus cereus ATCC 14579 Site: position = -372 score = 95.24 sequence = TATAAAAGTAATGAT... Gene: BC4550: Threonine transporter |
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Threonine transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |