Regulog T-box(Thr) - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Thr-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - T-box
By effector - Thr-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	2	2
Bacillus amyloliquefaciens FZB42	1	1
Bacillus pumilus SAFR-032	2	2
Bacillus licheniformis DSM 13	2	2
Anoxybacillus flavithermus WK1	1	1
Geobacillus kaustophilus HTA426	1	1
Bacillus cereus ATCC 14579	7	5
Bacillus halodurans C-125	1	1
Bacillus clausii KSM-K16	2	2
Oceanobacillus iheyensis HTE831	1	1
Paenibacillus sp. JDR-2	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
thrS	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -292 score = 91.49 sequence = GACACACGTATTGAT... Gene: BSU28950: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus amyloliquefaciens FZB42 Site: position = -299 score = 80.46 sequence = GCTACACGTATTGAT... Gene: RBAM_025990: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus pumilus SAFR-032 Site: position = -294 score = 94.5 sequence = AGAGACCGTATTGAT... Gene: BPUM_2539: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus licheniformis DSM 13 Site: position = -301 score = 82.73 sequence = ATATCATGTATTGAT... Gene: BLi03043: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Anoxybacillus flavithermus WK1 Site: position = -291 score = 92.97 sequence = CAAAAGTGATGATGA... Gene: Aflv_0521: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Geobacillus kaustophilus HTA426 Site: position = -291 score = 95.93 sequence = AATACAAGCGATGAC... Gene: GK2719: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus cereus ATCC 14579 Site: position = -274 score = 103.13 sequence = TTGAAATGTCATGAT... Gene: BC4576: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus halodurans C-125 Site: position = -304 score = 108.43 sequence = TTAAATGGTTATGAT... Gene: BH3141: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus clausii KSM-K16 Site: position = -253 score = 73.78 sequence = ATGAAAAGTGATGAT... Gene: ABC2697: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Oceanobacillus iheyensis HTE831 Site: position = -279 score = 106.65 sequence = ATTATTCGTGATGAT... Gene: OB2154: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Paenibacillus sp. JDR-2 Site: position = -336 score = 79.32 sequence = GCAAAAAGCAATGAC... Gene: Pjdr2_4792: Threonyl-tRNA synthetase (EC 6.1.1.3)	Threonyl-tRNA synthetase (EC 6.1.1.3)

CRON 2.
thrZ	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -276 score = 106.0 sequence = AATACATGCGATGAA... Gene: BSU37560: Threonyl-tRNA synthetase (EC 6.1.1.3)	Bacillus amyloliquefaciens FZB42	* Bacillus pumilus SAFR-032 Site: position = -266 score = 99.06 sequence = TCATTGCTTTGAAAA... Gene: BPUM_0761: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Bacillus licheniformis DSM 13 Site: position = -322 score = 100.11 sequence = TAAAGGTTGTGAAAG... Gene: BLi00234: Threonyl-tRNA synthetase (EC 6.1.1.3)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -265 score = 100.26 sequence = AATAAGCGAAGAAAA... Gene: BC2322: Threonyl-tRNA synthetase (EC 6.1.1.3)	Bacillus halodurans C-125	* Bacillus clausii KSM-K16 Site: position = -280 score = 109.87 sequence = AGCAAGAGCGATGAA... Gene: ABC3978: Threonyl-tRNA synthetase (EC 6.1.1.3)	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -307 score = 68.75 sequence = CGAAGGCAATGACCA... Gene: Pjdr2_1002: Threonyl-tRNA synthetase (EC 6.1.1.3)	Threonyl-tRNA synthetase (EC 6.1.1.3)

CRON 3.
hom	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU32260: Homoserine dehydrogenase (EC 1.1.1.3)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_029370: Homoserine dehydrogenase (EC 1.1.1.3)	Bacillus pumilus SAFR-032 Gene: BPUM_2888: Homoserine dehydrogenase (EC 1.1.1.3)	Bacillus licheniformis DSM 13 Gene: BLi03414: Homoserine dehydrogenase (EC 1.1.1.3)	Anoxybacillus flavithermus WK1 Gene: Aflv_2414: Homoserine dehydrogenase (EC 1.1.1.3)	Geobacillus kaustophilus HTA426 Gene: GK2964: Homoserine dehydrogenase (EC 1.1.1.3)	* Bacillus cereus ATCC 14579 Site: position = -385 score = 114.61 sequence = AAAAAGTAATGATAA... Gene: BC1964: Homoserine dehydrogenase (EC 1.1.1.3)	Bacillus halodurans C-125 Gene: BH3422: Homoserine dehydrogenase (EC 1.1.1.3)	Bacillus clausii KSM-K16 Gene: ABC2942: Homoserine dehydrogenase (EC 1.1.1.3)	Oceanobacillus iheyensis HTE831 Gene: OB0466: Homoserine dehydrogenase (EC 1.1.1.3)	Paenibacillus sp. JDR-2 Gene: Pjdr2_4407: Homoserine dehydrogenase (EC 1.1.1.3)	Homoserine dehydrogenase (EC 1.1.1.3)
thrC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU32250: Threonine synthase (EC 4.2.3.1)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_029360: Threonine synthase (EC 4.2.3.1)	Bacillus pumilus SAFR-032 Gene: BPUM_2887: Threonine synthase (EC 4.2.3.1)	Bacillus licheniformis DSM 13 Gene: BLi03413: Threonine synthase (EC 4.2.3.1)	Anoxybacillus flavithermus WK1 Gene: Aflv_2413: Threonine synthase (EC 4.2.3.1)	Geobacillus kaustophilus HTA426 Gene: GK2963: Threonine synthase (EC 4.2.3.1)	Bacillus cereus ATCC 14579 Gene: BC1965: Threonine synthase (EC 4.2.3.1)	Bacillus halodurans C-125 Gene: BH3421: Threonine synthase (EC 4.2.3.1)	Bacillus clausii KSM-K16 Gene: ABC2941: Threonine synthase (EC 4.2.3.1)	Oceanobacillus iheyensis HTE831 Gene: OB0465: Threonine synthase (EC 4.2.3.1)	Paenibacillus sp. JDR-2	Threonine synthase (EC 4.2.3.1)
thrB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU32240: Homoserine kinase (EC 2.7.1.39)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_029350: Homoserine kinase (EC 2.7.1.39)	Bacillus pumilus SAFR-032 Gene: BPUM_2886: Homoserine kinase (EC 2.7.1.39)	Bacillus licheniformis DSM 13 Gene: BLi03412: Homoserine kinase (EC 2.7.1.39)	Anoxybacillus flavithermus WK1 Gene: Aflv_2412: Homoserine kinase (EC 2.7.1.39)	Geobacillus kaustophilus HTA426 Gene: GK2962: Homoserine kinase (EC 2.7.1.39)	Bacillus cereus ATCC 14579 Gene: BC1966: Homoserine kinase (EC 2.7.1.39)	Bacillus halodurans C-125 Gene: BH3420: Homoserine kinase (EC 2.7.1.39)	Bacillus clausii KSM-K16 Gene: ABC2940: Homoserine kinase (EC 2.7.1.39)	Oceanobacillus iheyensis HTE831 Gene: OB0464: Homoserine kinase (EC 2.7.1.39)	Paenibacillus sp. JDR-2 Gene: Pjdr2_4406: Homoserine kinase (EC 2.7.1.39)	Homoserine kinase (EC 2.7.1.39)

CRON 4.
ykbA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU12860: Amino acid transporter	Bacillus amyloliquefaciens FZB42 Gene: RBAM_012710: Amino acid transporter	Bacillus pumilus SAFR-032 Gene: BPUM_1179: Amino acid transporter	Bacillus licheniformis DSM 13 Gene: BLi01387: Amino acid transporter	Anoxybacillus flavithermus WK1 Gene: Aflv_1288: Amino acid transporter	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -303 score = 104.88 sequence = TCAAGAAGTGATGAT... Gene: BC5013: Amino acid transporter	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Amino acid transporter

CRON 5.
brnQ	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -372 score = 95.24 sequence = TATAAAAGTAATGAT... Gene: BC4550: Threonine transporter	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Threonine transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Thr) - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --