Regulog T-box(Thr) - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Thr-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - T-box
- By effector - Thr-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 1 | 1 |
| Staphylococcus capitis SK14 | 1 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 1 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 2 | 2 |
| Staphylococcus haemolyticus JCSC1435 | 2 | 2 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 1 | 1 |
| Macrococcus caseolyticus JCSC5402 | 1 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| thrS |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -375 score = 92.1 sequence = AATCGTTTAAATGAT... Gene: SA1506: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Staphylococcus capitis SK14 Site: position = -301 score = 86.47 sequence = AACTATTGAAGATAA... Gene: STACA0001_2343: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -312 score = 74.64 sequence = CGTTGAAACTATTGA... Gene: SE1357: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -277 score = 83.11 sequence = TAAAAAATCGAGGAT... Gene: Sca_1289: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -275 score = 92.54 sequence = AATAGTTGAAGATAT... Gene: SH1242: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -303 score = 97.02 sequence = ATAATACGGAGACAA... Gene: SSP1082: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -250 score = 93.7 sequence = TATGAATAACATCAT... Gene: MCCL_1347: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Threonyl-tRNA synthetase (EC 6.1.1.3) |
| CRON 2. | ||||||||
| thrZ |
|
|
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -322 score = 41.67 sequence = TTGATTCGGTGATAA... Gene: Sca_0282: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -266 score = 77.55 sequence = ATTAATACATGATTG... Gene: SH0134: Threonyl-tRNA synthetase (EC 6.1.1.3) |
|
|
Threonyl-tRNA synthetase (EC 6.1.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |