Regulog T-box(Ser) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ser-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Ser-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 1 | 1 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 1 | 1 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 2 | 2 |
| Bacillus clausii KSM-K16 | 2 | 2 |
| Oceanobacillus iheyensis HTE831 | 1 | 1 |
| Paenibacillus sp. JDR-2 | 1 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| serA |
Gene: BSU23070: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: RBAM_021220: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: BPUM_2039: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: BLi02446: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Aflv_1055: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: GK2247: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
|
*
Bacillus halodurans C-125 Site: position = -397 score = 107.61 sequence = CTTAAAAACGATGAC... Gene: BH1602: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
*
Bacillus clausii KSM-K16 Site: position = -274 score = 96.58 sequence = GCTAAAAACGATGAT... Gene: ABC1843: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: OB2626: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Pjdr2_2370: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
| CRON 2. | ||||||||||||
| serS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -268 score = 138.97 sequence = GAAAAGCGTTGATAG... Gene: BSU00130: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -266 score = 125.87 sequence = GAAAAGCGTTGACAG... Gene: RBAM_000160: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Bacillus pumilus SAFR-032 Site: position = -265 score = 135.98 sequence = AAAAAGCGTTGACGG... Gene: BPUM_0509: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Bacillus licheniformis DSM 13 Site: position = -275 score = 132.41 sequence = GAAAAGCGTTGATAG... Gene: BLi00018: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Anoxybacillus flavithermus WK1 Site: position = -263 score = 142.97 sequence = AAAAAGCGATGACAG... Gene: Aflv_0013: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Geobacillus kaustophilus HTA426 Site: position = -274 score = 129.04 sequence = CGAAAGCGATGAGAG... Gene: GK0013: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Bacillus cereus ATCC 14579 Site: position = -272 score = 142.17 sequence = TAAGCGTGTTGATAG... Gene: BC0017: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Bacillus halodurans C-125 Site: position = -269 score = 139.37 sequence = ACAATGCGTTGAGAG... Gene: BH0024: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: ABC0013: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Oceanobacillus iheyensis HTE831 Site: position = -282 score = 127.77 sequence = GAAATGTAACGATAG... Gene: OB0012: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: Pjdr2_0093: Seryl-tRNA synthetase (EC 6.1.1.11) |
Seryl-tRNA synthetase (EC 6.1.1.11) |
| CRON 3. | ||||||||||||
| serS2 |
|
|
|
|
|
|
|
|
*
Bacillus clausii KSM-K16 Site: position = -214 score = 53.98 sequence = CATCAGGCCAATGAA... Gene: ABC1428: Seryl-tRNA synthetase (EC 6.1.1.11) |
|
*
Paenibacillus sp. JDR-2 Site: position = -217 score = 54.52 sequence = TTAGGCCGATGAAGA... Gene: Pjdr2_6148: Seryl-tRNA synthetase (EC 6.1.1.11) |
Seryl-tRNA synthetase (EC 6.1.1.11) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |