Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog T-box(Pro) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Pro-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 3 2
Bacillus pumilus SAFR-032 4 3
Bacillus licheniformis DSM 13 3 2
Anoxybacillus flavithermus WK1 3 2
Geobacillus kaustophilus HTA426 3 2
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 3 1
Bacillus clausii KSM-K16 3 1
Oceanobacillus iheyensis HTE831 4 3
Paenibacillus sp. JDR-2 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
proS2
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
*
Bacillus pumilus SAFR-032

Site:
position = -239
score = 95.39
sequence = TTCATCAACGTAGAT...

Gene: BPUM_0197: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -253
score = 109.23
sequence = TTATAACGATGAAAA...

Gene: BC0439: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -417
score = 109.79
sequence = ATGAAACGTGGACGG...

Gene: OB0566: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3413: Prolyl-tRNA synthetase (EC 6.1.1.15)
Prolyl-tRNA synthetase (EC 6.1.1.15)
 
CRON 2.
proS
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU16570: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_016410: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1556: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus licheniformis DSM 13

Gene: BLi01878: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1701: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Geobacillus kaustophilus HTA426

Gene: GK1257: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus cereus ATCC 14579

Gene: BC3817: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus halodurans C-125

Gene: BH2419: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Bacillus clausii KSM-K16

Gene: ABC2234: Prolyl-tRNA synthetase (EC 6.1.1.15)
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -280
score = 71.29
sequence = TCCAACAGCTTTGAT...

Gene: Pjdr2_3812: Prolyl-tRNA synthetase (EC 6.1.1.15)
Prolyl-tRNA synthetase (EC 6.1.1.15)
 
CRON 3.
proB
*2
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -262
score = 93.35
sequence = ATTGAGCGTTGAAGA...

Gene: BSU13120: Glutamate 5-kinase (EC 2.7.2.11)

Gene: BSU18470: Glutamate 5-kinase (EC 2.7.2.11)
*2
Bacillus amyloliquefaciens FZB42

Site:
position = -282
score = 93.25
sequence = ATTGAGCGTTGAAGA...

Gene: RBAM_012930: Glutamate 5-kinase (EC 2.7.2.11)

Gene: RBAM_018640: Glutamate 5-kinase (EC 2.7.2.11)
*2
Bacillus pumilus SAFR-032

Gene: BPUM_1823: Glutamate 5-kinase (EC 2.7.2.11)

Site:
position = -274
score = 123.52
sequence = AACGAGCGTTGAAAA...

Gene: BPUM_1207: Glutamate 5-kinase (EC 2.7.2.11)
*2
Bacillus licheniformis DSM 13

Gene: BLi02149: Glutamate 5-kinase (EC 2.7.2.11)

Site:
position = -282
score = 99.58
sequence = CACGAGCGTTGAAGA...

Gene: BLi01412: Glutamate 5-kinase (EC 2.7.2.11)
*
Anoxybacillus flavithermus WK1

Site:
position = -236
score = 86.89
sequence = GAAAAAGGCACGGGA...

Gene: Aflv_1272: Glutamate 5-kinase (EC 2.7.2.11)
*
Geobacillus kaustophilus HTA426

Site:
position = -304
score = 82.48
sequence = GAGAACGGCACGGGA...

Gene: GK2048: Glutamate 5-kinase (EC 2.7.2.11)
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -255
score = 92.38
sequence = ATTGCAGGCAATGAG...

Gene: BH1505: Glutamate 5-kinase (EC 2.7.2.11)
*
Bacillus clausii KSM-K16

Site:
position = -312
score = 81.23
sequence = CGGTGCAGTGATGAC...

Gene: ABC1767: Glutamate 5-kinase (EC 2.7.2.11)
*
Oceanobacillus iheyensis HTE831

Site:
position = -401
score = 74.54
sequence = TGAACGTTTAACAGA...

Gene: OB1052: Glutamate 5-kinase (EC 2.7.2.11)
*
Paenibacillus sp. JDR-2

Site:
position = -267
score = 79.02
sequence = ATGTAACGTGATGAC...

Gene: Pjdr2_2468: Glutamate 5-kinase (EC 2.7.2.11)
Glutamate 5-kinase (EC 2.7.2.11)
proA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU13130: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_012940: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1208: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Bacillus licheniformis DSM 13

Gene: BLi01413: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1271: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Geobacillus kaustophilus HTA426

Gene: GK2049: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH1504: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Bacillus clausii KSM-K16

Gene: ABC1766: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Oceanobacillus iheyensis HTE831

Gene: OB1053: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2467: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
proI
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -249
score = 79.05
sequence = GGAACGCTATGACGA...

Gene: BSU23800: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -252
score = 86.8
sequence = GGAACGCGATGACGA...

Gene: RBAM_021930: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
*
Bacillus pumilus SAFR-032

Site:
position = -252
score = 100.13
sequence = GATGTGCGATGACAA...

Gene: BPUM_2109: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
*
Bacillus licheniformis DSM 13

Site:
position = -153
score = 93.92
sequence = AAGACGCGATGAAGA...

Gene: BLi02549: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
*
Anoxybacillus flavithermus WK1

Site:
position = -257
score = 88.9
sequence = GTACGAAGCGATGAC...

Gene: Aflv_0982: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
*
Geobacillus kaustophilus HTA426

Site:
position = -223
score = 81.45
sequence = AACCGGCGATGAACA...

Gene: GK2331: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Bacillus cereus ATCC 14579

Gene: BC4134: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Bacillus halodurans C-125

Gene: BH1503: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Bacillus clausii KSM-K16

Gene: ABC1765: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
*
Oceanobacillus iheyensis HTE831

Site:
position = -373
score = 83.9
sequence = CAAATACGAGGAACG...

Gene: OB0013: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2466: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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