Regulog T-box(Pro) - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Pro-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - T-box
By effector - Pro-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	3	2
Bacillus amyloliquefaciens FZB42	3	2
Bacillus pumilus SAFR-032	4	3
Bacillus licheniformis DSM 13	3	2
Anoxybacillus flavithermus WK1	3	2
Geobacillus kaustophilus HTA426	3	2
Bacillus cereus ATCC 14579	1	1
Bacillus halodurans C-125	3	1
Bacillus clausii KSM-K16	3	1
Oceanobacillus iheyensis HTE831	4	3
Paenibacillus sp. JDR-2	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
proS2	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	* Bacillus pumilus SAFR-032 Site: position = -239 score = 95.39 sequence = TTCATCAACGTAGAT... Gene: BPUM_0197: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -253 score = 109.23 sequence = TTATAACGATGAAAA... Gene: BC0439: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -417 score = 109.79 sequence = ATGAAACGTGGACGG... Gene: OB0566: Prolyl-tRNA synthetase (EC 6.1.1.15)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3413: Prolyl-tRNA synthetase (EC 6.1.1.15)	Prolyl-tRNA synthetase (EC 6.1.1.15)

CRON 2.
proS	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU16570: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_016410: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus pumilus SAFR-032 Gene: BPUM_1556: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus licheniformis DSM 13 Gene: BLi01878: Prolyl-tRNA synthetase (EC 6.1.1.15)	Anoxybacillus flavithermus WK1 Gene: Aflv_1701: Prolyl-tRNA synthetase (EC 6.1.1.15)	Geobacillus kaustophilus HTA426 Gene: GK1257: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus cereus ATCC 14579 Gene: BC3817: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus halodurans C-125 Gene: BH2419: Prolyl-tRNA synthetase (EC 6.1.1.15)	Bacillus clausii KSM-K16 Gene: ABC2234: Prolyl-tRNA synthetase (EC 6.1.1.15)	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -280 score = 71.29 sequence = TCCAACAGCTTTGAT... Gene: Pjdr2_3812: Prolyl-tRNA synthetase (EC 6.1.1.15)	Prolyl-tRNA synthetase (EC 6.1.1.15)

CRON 3.
proB	2 Bacillus subtilis subsp. subtilis str. 168* Site: position = -262 score = 93.35 sequence = ATTGAGCGTTGAAGA... Gene: BSU13120: Glutamate 5-kinase (EC 2.7.2.11) Gene: BSU18470: Glutamate 5-kinase (EC 2.7.2.11)	2 Bacillus amyloliquefaciens FZB42* Site: position = -282 score = 93.25 sequence = ATTGAGCGTTGAAGA... Gene: RBAM_012930: Glutamate 5-kinase (EC 2.7.2.11) Gene: RBAM_018640: Glutamate 5-kinase (EC 2.7.2.11)	2 Bacillus pumilus SAFR-032* Gene: BPUM_1823: Glutamate 5-kinase (EC 2.7.2.11) Site: position = -274 score = 123.52 sequence = AACGAGCGTTGAAAA... Gene: BPUM_1207: Glutamate 5-kinase (EC 2.7.2.11)	2 Bacillus licheniformis DSM 13* Gene: BLi02149: Glutamate 5-kinase (EC 2.7.2.11) Site: position = -282 score = 99.58 sequence = CACGAGCGTTGAAGA... Gene: BLi01412: Glutamate 5-kinase (EC 2.7.2.11)	* Anoxybacillus flavithermus WK1 Site: position = -236 score = 86.89 sequence = GAAAAAGGCACGGGA... Gene: Aflv_1272: Glutamate 5-kinase (EC 2.7.2.11)	* Geobacillus kaustophilus HTA426 Site: position = -304 score = 82.48 sequence = GAGAACGGCACGGGA... Gene: GK2048: Glutamate 5-kinase (EC 2.7.2.11)	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -255 score = 92.38 sequence = ATTGCAGGCAATGAG... Gene: BH1505: Glutamate 5-kinase (EC 2.7.2.11)	* Bacillus clausii KSM-K16 Site: position = -312 score = 81.23 sequence = CGGTGCAGTGATGAC... Gene: ABC1767: Glutamate 5-kinase (EC 2.7.2.11)	* Oceanobacillus iheyensis HTE831 Site: position = -401 score = 74.54 sequence = TGAACGTTTAACAGA... Gene: OB1052: Glutamate 5-kinase (EC 2.7.2.11)	* Paenibacillus sp. JDR-2 Site: position = -267 score = 79.02 sequence = ATGTAACGTGATGAC... Gene: Pjdr2_2468: Glutamate 5-kinase (EC 2.7.2.11)	Glutamate 5-kinase (EC 2.7.2.11)
proA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU13130: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_012940: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Bacillus pumilus SAFR-032 Gene: BPUM_1208: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Bacillus licheniformis DSM 13 Gene: BLi01413: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Anoxybacillus flavithermus WK1 Gene: Aflv_1271: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Geobacillus kaustophilus HTA426 Gene: GK2049: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1504: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Bacillus clausii KSM-K16 Gene: ABC1766: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Oceanobacillus iheyensis HTE831 Gene: OB1053: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2467: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
proI	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -249 score = 79.05 sequence = GGAACGCTATGACGA... Gene: BSU23800: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	* Bacillus amyloliquefaciens FZB42 Site: position = -252 score = 86.8 sequence = GGAACGCGATGACGA... Gene: RBAM_021930: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	* Bacillus pumilus SAFR-032 Site: position = -252 score = 100.13 sequence = GATGTGCGATGACAA... Gene: BPUM_2109: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	* Bacillus licheniformis DSM 13 Site: position = -153 score = 93.92 sequence = AAGACGCGATGAAGA... Gene: BLi02549: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	* Anoxybacillus flavithermus WK1 Site: position = -257 score = 88.9 sequence = GTACGAAGCGATGAC... Gene: Aflv_0982: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	* Geobacillus kaustophilus HTA426 Site: position = -223 score = 81.45 sequence = AACCGGCGATGAACA... Gene: GK2331: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Bacillus cereus ATCC 14579 Gene: BC4134: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Bacillus halodurans C-125 Gene: BH1503: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Bacillus clausii KSM-K16 Gene: ABC1765: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	* Oceanobacillus iheyensis HTE831 Site: position = -373 score = 83.9 sequence = CAAATACGAGGAACG... Gene: OB0013: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2466: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Pyrroline-5-carboxylate reductase (EC 1.5.1.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Pro) - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --