Regulog T-box(Phe) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Phe-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Phe-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 1 |
| Bacillus amyloliquefaciens FZB42 | 2 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 2 | 1 |
| Anoxybacillus flavithermus WK1 | 2 | 1 |
| Geobacillus kaustophilus HTA426 | 2 | 1 |
| Bacillus cereus ATCC 14579 | 2 | 1 |
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | 2 | 1 |
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| pheS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -311 score = 55.26 sequence = TTCAAAAACCGTGAC... Gene: BSU28640: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -316 score = 62.44 sequence = TGTAAAAACCGTGAC... Gene: RBAM_025710: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Bacillus pumilus SAFR-032 Site: position = -334 score = 73.08 sequence = TTTAAAAACCATGAT... Gene: BPUM_2522: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Bacillus licheniformis DSM 13 Site: position = -316 score = 66.33 sequence = TTTAAAAACAGTGAT... Gene: BLi03016: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Anoxybacillus flavithermus WK1 Site: position = -279 score = 122.64 sequence = AAAAAACGATGATCG... Gene: Aflv_0542: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Geobacillus kaustophilus HTA426 Site: position = -336 score = 107.9 sequence = GACAACAACGATGAC... Gene: GK2707: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Bacillus cereus ATCC 14579 Site: position = -274 score = 110.0 sequence = ACGAAAAACGTTGAT... Gene: BC4561: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Bacillus halodurans C-125 Site: position = -368 score = 103.73 sequence = TGAAAATGCGTGGAA... Gene: BH3111: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Bacillus clausii KSM-K16 Site: position = -278 score = 99.18 sequence = ATAAAAAGCGTTGAT... Gene: ABC2680: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Oceanobacillus iheyensis HTE831 Site: position = -305 score = 88.16 sequence = AATACAAGCAATGAA... Gene: OB2131: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Paenibacillus sp. JDR-2 Site: position = -314 score = 89.67 sequence = TGAAAGCTTTGATGG... Gene: Pjdr2_1383: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
| pheT |
Gene: BSU28630: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: RBAM_025700: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: BPUM_2521: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: BLi03015: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: Aflv_0543: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: GK2706: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: BC4560: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: BH3110: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: ABC2679: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: OB2130: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: Pjdr2_1384: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |