Regulog T-box(Phe) - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Phe-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - T-box
- By effector - Phe-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 2 | 1 |
| Staphylococcus capitis SK14 | 2 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 2 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 2 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 2 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 2 | 1 |
| Macrococcus caseolyticus JCSC5402 | 2 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| pheS |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -300 score = 75.8 sequence = ATAAACCAATAAAAA... Gene: SA0985: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Staphylococcus capitis SK14 Site: position = -301 score = 81.21 sequence = ATCAACCGATAAAAA... Gene: STACA0001_2150: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -298 score = 74.7 sequence = AATAACCTATAAAAA... Gene: SE0831: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -279 score = 76.95 sequence = TATATGCTGATAAAA... Gene: Sca_0756: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -284 score = 86.83 sequence = AATATAACCGATAAA... Gene: SH1823: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -288 score = 73.23 sequence = ATATGAACCCATAAA... Gene: SSP1657: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -248 score = 71.6 sequence = TACATCGCCGTTTTA... Site: position = -248 score = 71.6 sequence = TACATCGCCGTTTTA... Gene: MCCL_1327: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) |
| pheT |
Gene: SA0986: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: STACA0001_2151: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: SE0832: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: Sca_0757: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: SH1822: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: SSP1656: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Gene: MCCL_1326: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |