Regulog T-box(Met) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Met-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Met-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | ||
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus pumilus SAFR-032 | 4 | 1 |
| Bacillus licheniformis DSM 13 | ||
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 | 2 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metS |
Gene: BSU00380: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: RBAM_000470: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: BPUM_0022: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: BLi00051: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: Aflv_0032: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: GK0031: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*2
Bacillus cereus ATCC 14579 Gene: BC0043: Methionyl-tRNA synthetase (EC 6.1.1.10) Site: position = -322 score = 111.57 sequence = CGTAAAAGCGTTGAA... Gene: BC5031: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Bacillus halodurans C-125 Site: position = -346 score = 73.43 sequence = GAGTCCTGATGAAGG... Gene: BH0053: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Bacillus clausii KSM-K16 Site: position = -265 score = 68.42 sequence = GAATGTCTATGAACG... Gene: ABC0061: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: OB0046: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*2
Paenibacillus sp. JDR-2 Site: position = -331 score = 75.43 sequence = CATATTCGATGAACG... Gene: Pjdr2_2273: Methionyl-tRNA synthetase (EC 6.1.1.10) Site: position = -314 score = 95.53 sequence = TAATGGCAACGAAGA... Gene: Pjdr2_3139: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Methionyl-tRNA synthetase (EC 6.1.1.10) |
| CRON 2. | ||||||||||||
| BPUM_3680 |
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*
Bacillus pumilus SAFR-032 Site: position = -382 score = 110.2 sequence = TAAACAGGCAATGAC... Gene: BPUM_3680: Hypothetical protein |
Gene: BLi04329: Hypothetical protein |
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Gene: OB1067: Hypothetical protein |
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Hypothetical protein |
| mtsA |
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Gene: BPUM_3679: Substrate-specific component MtsA of methionine-regulated ECF transporter |
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Gene: BC2654: Substrate-specific component MtsA of methionine-regulated ECF transporter |
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Substrate-specific component MtsA of methionine-regulated ECF transporter |
| mtsB |
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Gene: BPUM_3678: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter |
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Gene: BC2655: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter |
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Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter |
| mtsC |
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Gene: BPUM_3677: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter |
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Gene: BC2656: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter |
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Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |