Regulog T-box(Met) - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Met-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - T-box
- By effector - Met-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 5 | 1 |
| Staphylococcus capitis SK14 | 5 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 5 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 5 | 2 |
| Staphylococcus haemolyticus JCSC1435 | 5 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 5 | 1 |
| Macrococcus caseolyticus JCSC5402 | 1 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| metE2 |
|
|
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -309 score = 105.89 sequence = AAAAGATAAAGATGA... Gene: Sca_0069: Methionine synthase II (cobalamin-independent) |
|
|
*
Macrococcus caseolyticus JCSC5402 Site: position = -380 score = 92.52 sequence = ACAAAGCGATAAAAA... Gene: MCCL_0261: Methionine synthase II (cobalamin-independent) |
Methionine synthase II (cobalamin-independent) |
| CRON 2. | ||||||||
| metI |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -229 score = 35.66 sequence = GTTAATAAGTATGGG... Site: position = -434 score = 74.83 sequence = CGTAAACACAATAAA... Gene: SA0347: Cystathionine gamma-synthase (EC 2.5.1.48) |
*
Staphylococcus capitis SK14 Site: position = -134 score = 38.27 sequence = TAGAGGTTACTTTAG... Gene: STACA0001_1416: Cystathionine gamma-synthase (EC 2.5.1.48) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -131 score = 36.51 sequence = AGGTTACTTTAGTAA... Gene: SE2379: Cystathionine gamma-synthase (EC 2.5.1.48) |
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -135 score = 33.69 sequence = AGGTTACTTTAGCAA... Gene: SH2635: Cystathionine gamma-synthase (EC 2.5.1.48) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -431 score = 72.59 sequence = GAAACACAGTAACAA... Gene: SSP2413: Cystathionine gamma-synthase (EC 2.5.1.48) |
|
Cystathionine gamma-synthase (EC 2.5.1.48) |
| metC |
Gene: SA0346: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: STACA0001_1415: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: SE2380: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -247 score = 39.81 sequence = GATTATTATAATAGC... Gene: Sca_0014: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: SH2636: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: SSP2414: Cystathionine beta-lyase (EC 4.4.1.8) |
|
Cystathionine beta-lyase (EC 4.4.1.8) |
| metF |
Gene: SA0345: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
Gene: STACA0001_1414: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
Gene: SE2381: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
Gene: Sca_0013: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
Gene: SH2637: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
Gene: SSP2415: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
|
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain |
| metE |
Gene: SA0344: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: STACA0001_1413: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: SE2382: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: Sca_0012: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: SH2638: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: SSP2416: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| mdh |
Gene: SA0343: Metal-dependent hydrolase/cyclase |
Gene: STACA0001_1412: Metal-dependent hydrolase/cyclase |
Gene: SE2383: Metal-dependent hydrolase/cyclase |
Gene: Sca_0011: Metal-dependent hydrolase/cyclase |
Gene: SH2639: Metal-dependent hydrolase/cyclase |
Gene: SSP2417: Metal-dependent hydrolase/cyclase |
|
Metal-dependent hydrolase/cyclase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |