Regulog T-box(Lys) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Lys-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Lys-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | ||
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | ||
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 | 2 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| lysX |
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Bacillus amyloliquefaciens FZB42 Site: position = -278 score = 85.57 sequence = CCGAAAAGCGCTGAA... Gene: RBAM_024030: Lysine permease, MFS family |
*
Bacillus pumilus SAFR-032 Site: position = -295 score = 72.79 sequence = AGACATAGCGCTAAT... Gene: BPUM_2348: Lysine permease, MFS family |
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Bacillus halodurans C-125 Site: position = -331 score = 108.19 sequence = CTAACACGCGATGAA... Gene: BH0807: Lysine permease, MFS family |
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Bacillus clausii KSM-K16 Site: position = -324 score = 95.48 sequence = AAAAAATGCGATGAA... Gene: ABC1998: Lysine permease, MFS family |
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Lysine permease, MFS family |
| CRON 2. | ||||||||||||
| glnS2 |
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Gene: BPUM_0312: Glutaminyl-tRNA synthetase paralog |
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Paenibacillus sp. JDR-2 Site: position = -314 score = 92.94 sequence = TGGAAATGCGATGAC... Gene: Pjdr2_4142: Glutaminyl-tRNA synthetase paralog |
Glutaminyl-tRNA synthetase paralog |
| CRON 3. | ||||||||||||
| asd |
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Paenibacillus sp. JDR-2 Site: position = -382 score = 88.16 sequence = GAAATGCAACGACGA... Gene: Pjdr2_2936: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
| CRON 4. | ||||||||||||
| lysS |
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Bacillus cereus ATCC 14579 Site: position = -337 score = 99.86 sequence = TTAAGGCATAGAAGA... Gene: BC2535: Lysyl-tRNA synthetase (class I) (EC 6.1.1.6) |
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Lysyl-tRNA synthetase (class I) (EC 6.1.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |