Regulog T-box(Lys) - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Lys-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - T-box
By effector - Lys-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42	1	1
Bacillus pumilus SAFR-032	1	1
Bacillus licheniformis DSM 13
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579	1	1
Bacillus halodurans C-125	1	1
Bacillus clausii KSM-K16	1	1
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
lysX	Bacillus subtilis subsp. subtilis str. 168	* Bacillus amyloliquefaciens FZB42 Site: position = -278 score = 85.57 sequence = CCGAAAAGCGCTGAA... Gene: RBAM_024030: Lysine permease, MFS family	* Bacillus pumilus SAFR-032 Site: position = -295 score = 72.79 sequence = AGACATAGCGCTAAT... Gene: BPUM_2348: Lysine permease, MFS family	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -331 score = 108.19 sequence = CTAACACGCGATGAA... Gene: BH0807: Lysine permease, MFS family	* Bacillus clausii KSM-K16 Site: position = -324 score = 95.48 sequence = AAAAAATGCGATGAA... Gene: ABC1998: Lysine permease, MFS family	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Lysine permease, MFS family

CRON 2.
glnS2	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_0312: Glutaminyl-tRNA synthetase paralog	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -314 score = 92.94 sequence = TGGAAATGCGATGAC... Gene: Pjdr2_4142: Glutaminyl-tRNA synthetase paralog	Glutaminyl-tRNA synthetase paralog

CRON 3.
asd	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -382 score = 88.16 sequence = GAAATGCAACGACGA... Gene: Pjdr2_2936: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)

CRON 4.
lysS	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -337 score = 99.86 sequence = TTAAGGCATAGAAGA... Gene: BC2535: Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Lysyl-tRNA synthetase (class I) (EC 6.1.1.6)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Lys) - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --