Regulog T-box(Ile) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ile-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Ile-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 1 | 1 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 1 | 1 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 8 | 4 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 10 | 3 |
| Paenibacillus sp. JDR-2 | 1 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ileS2 |
|
|
|
|
|
|
*
Bacillus cereus ATCC 14579 Site: position = -287 score = 124.5 sequence = CAAATCTGAAGACGA... Gene: BC2164: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
|
|
*
Oceanobacillus iheyensis HTE831 Site: position = -291 score = 90.9 sequence = TGAATTCGATGACGA... Gene: OB0362: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
Gene: Pjdr2_3873: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
| CRON 2. | ||||||||||||
| brnQ |
|
|
|
|
|
|
*
Bacillus cereus ATCC 14579 Site: position = -278 score = 123.15 sequence = TAAAAATTCATTGAC... Gene: BC1441: Branched-chain amino acid transport system carrier protein BraB |
|
|
|
|
Branched-chain amino acid transport system carrier protein BraB |
| CRON 3. | ||||||||||||
| Pjdr2_4149 |
|
|
|
|
|
|
|
|
|
|
*
Paenibacillus sp. JDR-2 Site: position = -282 score = 119.75 sequence = GCGAAATGCGATGAC... Gene: Pjdr2_4149: GCN5-related N-acetyltransferase |
GCN5-related N-acetyltransferase |
| CRON 4. | ||||||||||||
| ilvB |
Gene: BSU28310: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: RBAM_025370: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: BPUM_2472: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: BLi02961: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: Aflv_0591: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: GK2661: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: BC1777: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: BH3061: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: ABC2645: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Oceanobacillus iheyensis HTE831 Site: position = -384 score = 63.67 sequence = CGTTAATTCGTTGAC... Gene: OB2623: Acetolactate synthase large subunit (EC 2.2.1.6) |
3
Paenibacillus sp. JDR-2 Gene: Pjdr2_2907: Acetolactate synthase large subunit (EC 2.2.1.6) Gene: Pjdr2_1302: Acetolactate synthase large subunit (EC 2.2.1.6) Gene: Pjdr2_4086: Acetolactate synthase large subunit (EC 2.2.1.6) |
Acetolactate synthase large subunit (EC 2.2.1.6) |
| ilvH |
Gene: BSU28300: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: RBAM_025360: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: BPUM_2471: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: BLi02960: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Aflv_0592: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: GK2660: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: BC1398: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: BH3060: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: ABC2644: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: OB2622: Acetolactate synthase small subunit (EC 2.2.1.6) |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_2908: Acetolactate synthase small subunit (EC 2.2.1.6) Gene: Pjdr2_1303: Acetolactate synthase small subunit (EC 2.2.1.6) |
Acetolactate synthase small subunit (EC 2.2.1.6) |
| ilvC |
Gene: BSU28290: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: RBAM_025350: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: BPUM_2470: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: BLi02959: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: Aflv_0593: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: GK2659: Ketol-acid reductoisomerase (EC 1.1.1.86) |
2
Bacillus cereus ATCC 14579 Gene: BC1399: Ketol-acid reductoisomerase (EC 1.1.1.86) Gene: BC1779: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: BH3059: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: ABC2643: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: OB2621: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: Pjdr2_1304: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Ketol-acid reductoisomerase (EC 1.1.1.86) |
| leuA |
Gene: BSU28280: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: RBAM_025340: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: BPUM_2469: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: BLi02958: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: Aflv_0594: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: GK2658: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: BC1400: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: BH3058: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: ABC2642: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: OB2620: 2-isopropylmalate synthase (EC 2.3.3.13) |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_1305: 2-isopropylmalate synthase (EC 2.3.3.13) Gene: Pjdr2_1026: 2-isopropylmalate synthase (EC 2.3.3.13) |
2-isopropylmalate synthase (EC 2.3.3.13) |
| leuB |
Gene: BSU28270: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: RBAM_025330: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: BPUM_2468: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: BLi02957: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Aflv_0595: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: GK2657: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: BC1401: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: BH3057: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: ABC2641: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: OB2619: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
|
3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
| leuC |
Gene: BSU28260: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: RBAM_025320: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: BPUM_2467: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: BLi02956: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Aflv_0596: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: GK2656: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: BC1402: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: BH3056: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: ABC2640: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: OB2618: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Pjdr2_2473: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
| leuD |
Gene: BSU28250: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: RBAM_025310: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BPUM_2466: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BLi02955: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Aflv_0597: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: GK2655: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BC1403: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BH3055: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: ABC2639: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: OB2617: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Pjdr2_2474: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
| ilvA |
|
|
|
|
Gene: Aflv_1393: Threonine dehydratase (EC 4.3.1.19) |
Gene: GK1591: Threonine dehydratase (EC 4.3.1.19) |
2
Bacillus cereus ATCC 14579 Gene: BC2400: Threonine dehydratase (EC 4.3.1.19) Gene: BC1781: Threonine dehydratase (EC 4.3.1.19) |
|
|
Gene: OB2616: Threonine dehydratase (EC 4.3.1.19) |
|
Threonine dehydratase (EC 4.3.1.19) |
| ilvE |
|
|
|
|
|
|
*
Bacillus cereus ATCC 14579 Site: position = -411 score = 97.28 sequence = AGAATGCGTAGAAGA... Gene: BC1776: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
|
|
|
|
Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
| ilvD |
Gene: BSU21870: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: RBAM_020010: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: BPUM_1922: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: BLi02324: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: Aflv_1238: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: GK2046: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: BC1780: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: BH3062: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Gene: ABC2646: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
|
Gene: Pjdr2_4335: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
Dihydroxy-acid dehydratase (EC 4.2.1.9) |
| CRON 5. | ||||||||||||
| ileS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -278 score = 104.73 sequence = AAAAAACGGTTGAAA... Gene: BSU15430: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -280 score = 97.17 sequence = AAAAGACGATTGAAA... Gene: RBAM_015260: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Bacillus pumilus SAFR-032 Site: position = -290 score = 107.02 sequence = GATAAACGTTTGAAA... Gene: BPUM_1442: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Bacillus licheniformis DSM 13 Site: position = -280 score = 100.21 sequence = GAAAAACGTTTGAGA... Gene: BLi01762: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Anoxybacillus flavithermus WK1 Site: position = -262 score = 133.42 sequence = GCAAAAAACGATGAA... Gene: Aflv_1812: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Geobacillus kaustophilus HTA426 Site: position = -273 score = 110.63 sequence = CATCGACGATGAAAG... Gene: GK1136: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Bacillus cereus ATCC 14579 Site: position = -296 score = 120.33 sequence = AAGAAAAACGAAGAT... Gene: BC3895: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Bacillus halodurans C-125 Site: position = -330 score = 104.57 sequence = ACAATGGACGATGAG... Gene: BH2545: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Bacillus clausii KSM-K16 Site: position = -291 score = 88.65 sequence = GTTAAAAACAAGGAT... Gene: ABC2342: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
*
Oceanobacillus iheyensis HTE831 Site: position = -262 score = 127.95 sequence = TAAAAGCAATGATAG... Gene: OB1484: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
|
Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |