Regulog T-box(Gly) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Gly-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Gly-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 1 |
| Bacillus amyloliquefaciens FZB42 | 2 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 2 | 1 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| glyS |
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Anoxybacillus flavithermus WK1 Site: position = -236 score = 91.78 sequence = AGGTGCAACGATGAA... Gene: Aflv_2771: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Geobacillus kaustophilus HTA426 Site: position = -244 score = 76.88 sequence = ATGGATCGCGATGAC... Gene: GK3430: Glycyl-tRNA synthetase (EC 6.1.1.14) |
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Glycyl-tRNA synthetase (EC 6.1.1.14) |
| CRON 2. | ||||||||||||
| glyQ |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -258 score = 96.78 sequence = ATATGTTGCAGTGAG... Gene: BSU25270: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -263 score = 87.01 sequence = ATATGTTGCAGTGAC... Gene: RBAM_023570: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Bacillus pumilus SAFR-032 Site: position = -291 score = 93.34 sequence = ATATGTTGCATTGAC... Gene: BPUM_2259: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Bacillus licheniformis DSM 13 Site: position = -280 score = 88.59 sequence = TGATGTTGCGTTGAC... Gene: BLi02718: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
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*
Bacillus halodurans C-125 Site: position = -326 score = 100.59 sequence = TCAATGCTATGACGG... Gene: BH1370: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
Gene: ABC1684: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Oceanobacillus iheyensis HTE831 Site: position = -272 score = 96.42 sequence = TTCTATTGCGATGAA... Gene: OB1949: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Paenibacillus sp. JDR-2 Site: position = -281 score = 60.87 sequence = TATGGACAGTGATGG... Gene: Pjdr2_2239: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
| glyS |
Gene: BSU25260: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: RBAM_023560: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: BPUM_2258: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: BLi02717: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
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Gene: BH1371: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: ABC1685: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: OB1948: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: Pjdr2_2240: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |