Regulog T-box(Cys) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Cys-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Cys-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 1 |
| Bacillus amyloliquefaciens FZB42 | 2 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 2 | 1 |
| Anoxybacillus flavithermus WK1 | 2 | 1 |
| Geobacillus kaustophilus HTA426 | 2 | 1 |
| Bacillus cereus ATCC 14579 | 2 | 1 |
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | 2 | 1 |
| Oceanobacillus iheyensis HTE831 | 3 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| OB0097 |
|
|
|
|
|
|
|
|
|
*
Oceanobacillus iheyensis HTE831 Site: position = -180 score = 109.11 sequence = ATAAAACGTAGAAGA... Gene: OB0097: Hypothetical protein |
|
Hypothetical protein |
| cysE |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -298 score = 102.56 sequence = AATGATTGTTGACAG... Gene: BSU00930: Serine acetyltransferase (EC 2.3.1.30) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -307 score = 104.59 sequence = TACGATTGTTGACAG... Gene: RBAM_001180: Serine acetyltransferase (EC 2.3.1.30) |
*
Bacillus pumilus SAFR-032 Site: position = -311 score = 101.54 sequence = GGAAATCGTTGCGAG... Gene: BPUM_0078: Serine acetyltransferase (EC 2.3.1.30) |
*
Bacillus licheniformis DSM 13 Site: position = -300 score = 102.92 sequence = ATAAATCGTTGACAG... Gene: BLi00111: Serine acetyltransferase (EC 2.3.1.30) |
*
Anoxybacillus flavithermus WK1 Site: position = -245 score = 114.31 sequence = TGAAAGCGTTGATGA... Gene: Aflv_0083: Serine acetyltransferase (EC 2.3.1.30) |
*
Geobacillus kaustophilus HTA426 Site: position = -295 score = 95.96 sequence = AAAAAGCGTTGACGA... Gene: GK0084: Serine acetyltransferase (EC 2.3.1.30) |
*
Bacillus cereus ATCC 14579 Site: position = -396 score = 110.36 sequence = GAAAAGCGACGAGAA... Gene: BC0109: Serine acetyltransferase (EC 2.3.1.30) |
*
Bacillus halodurans C-125 Site: position = -312 score = 103.89 sequence = AAAGCGCGTTGAAGA... Gene: BH0110: Serine acetyltransferase (EC 2.3.1.30) |
*
Bacillus clausii KSM-K16 Site: position = -270 score = 86.08 sequence = ACAAAACGTTGAATG... Gene: ABC0128: Serine acetyltransferase (EC 2.3.1.30) |
Gene: OB0098: Serine acetyltransferase (EC 2.3.1.30) |
*
Paenibacillus sp. JDR-2 Site: position = -456 score = 48.31 sequence = TTAAAAAGCCATGAA... Gene: Pjdr2_5705: Serine acetyltransferase (EC 2.3.1.30) |
Serine acetyltransferase (EC 2.3.1.30) |
| cysS |
Gene: BSU00940: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: RBAM_001190: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: BPUM_0079: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: BLi00112: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: Aflv_0084: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: GK0085: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: BC0110: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: BH0111: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: ABC0129: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: OB0099: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: Pjdr2_5704: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |