Regulog T-box(Asp) - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Asp-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - T-box
By effector - Asp-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426	2	1
Bacillus cereus ATCC 14579	3	2
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831	2	1
Paenibacillus sp. JDR-2	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
hisS	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU27560: Histidyl-tRNA synthetase (EC 6.1.1.21)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_024670: Histidyl-tRNA synthetase (EC 6.1.1.21)	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi02882: Histidyl-tRNA synthetase (EC 6.1.1.21)	Anoxybacillus flavithermus WK1 Gene: Aflv_0730: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Geobacillus kaustophilus HTA426 Site: position = -279 score = 123.99 sequence = GGAACAACCGATGAT... Gene: GK2573: Histidyl-tRNA synthetase (EC 6.1.1.21)	2 Bacillus cereus ATCC 14579* Site: position = -301 score = 127.15 sequence = AATATAACCGTTGAT... Gene: BC4398: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: BC3317: Histidyl-tRNA synthetase (EC 6.1.1.21)	Bacillus halodurans C-125 Gene: BH1251: Histidyl-tRNA synthetase (EC 6.1.1.21)	2 Bacillus clausii KSM-K16 Gene: ABC3310: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: ABC1576: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Oceanobacillus iheyensis HTE831 Site: position = -281 score = 128.27 sequence = CGTACAACCGTTGAA... Gene: OB2020: Histidyl-tRNA synthetase (EC 6.1.1.21)	2 Paenibacillus sp. JDR-2* Gene: Pjdr2_0932: Histidyl-tRNA synthetase (EC 6.1.1.21) Site: position = -495 score = 78.8 sequence = TTCTGATTCGTTGAT... Gene: Pjdr2_4376: Histidyl-tRNA synthetase (EC 6.1.1.21)	Histidyl-tRNA synthetase (EC 6.1.1.21)
aspS	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU27550: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_024660: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Bacillus pumilus SAFR-032 Gene: BPUM_2396: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Bacillus licheniformis DSM 13 Gene: BLi02881: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Anoxybacillus flavithermus WK1 Gene: Aflv_0731: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Geobacillus kaustophilus HTA426 Gene: GK2572: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Bacillus cereus ATCC 14579 Gene: BC4397: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Bacillus halodurans C-125 Gene: BH1252: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Bacillus clausii KSM-K16 Gene: ABC1577: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Oceanobacillus iheyensis HTE831 Gene: OB2019: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Paenibacillus sp. JDR-2 Gene: Pjdr2_4375: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Aspartyl-tRNA synthetase (EC 6.1.1.12)

CRON 2.
asnS3	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -317 score = 135.8 sequence = AAAAAGTGATGATCA... Gene: BC2169: Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Asp) - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --