Regulog T-box(Asp) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Asp-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Asp-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | ||
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus pumilus SAFR-032 | ||
| Bacillus licheniformis DSM 13 | ||
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | 2 | 1 |
| Bacillus cereus ATCC 14579 | 3 | 2 |
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| hisS |
Gene: BSU27560: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Gene: RBAM_024670: Histidyl-tRNA synthetase (EC 6.1.1.21) |
|
Gene: BLi02882: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Gene: Aflv_0730: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Geobacillus kaustophilus HTA426 Site: position = -279 score = 123.99 sequence = GGAACAACCGATGAT... Gene: GK2573: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*2
Bacillus cereus ATCC 14579 Site: position = -301 score = 127.15 sequence = AATATAACCGTTGAT... Gene: BC4398: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: BC3317: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Gene: BH1251: Histidyl-tRNA synthetase (EC 6.1.1.21) |
2
Bacillus clausii KSM-K16 Gene: ABC3310: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: ABC1576: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Oceanobacillus iheyensis HTE831 Site: position = -281 score = 128.27 sequence = CGTACAACCGTTGAA... Gene: OB2020: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*2
Paenibacillus sp. JDR-2 Gene: Pjdr2_0932: Histidyl-tRNA synthetase (EC 6.1.1.21) Site: position = -495 score = 78.8 sequence = TTCTGATTCGTTGAT... Gene: Pjdr2_4376: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Histidyl-tRNA synthetase (EC 6.1.1.21) |
| aspS |
Gene: BSU27550: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: RBAM_024660: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BPUM_2396: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BLi02881: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: Aflv_0731: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: GK2572: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BC4397: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BH1252: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: ABC1577: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: OB2019: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: Pjdr2_4375: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Aspartyl-tRNA synthetase (EC 6.1.1.12) |
| CRON 2. | ||||||||||||
| asnS3 |
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*
Bacillus cereus ATCC 14579 Site: position = -317 score = 135.8 sequence = AAAAAGTGATGATCA... Gene: BC2169: Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23) |
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Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |