Regulog T-box(Asn) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Asn-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Asn-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 1 |
| Bacillus amyloliquefaciens FZB42 | 2 | 1 |
| Bacillus pumilus SAFR-032 | ||
| Bacillus licheniformis DSM 13 | 2 | 1 |
| Anoxybacillus flavithermus WK1 | 2 | 1 |
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | 2 | 2 |
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | 2 | 1 |
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| asnA |
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*
Bacillus cereus ATCC 14579 Site: position = -328 score = 113.72 sequence = AAACGACTATGAAAG... Gene: BC1746: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Aspartate--ammonia ligase (EC 6.3.1.1) |
| CRON 2. | ||||||||||||
| asnS2 |
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*
Bacillus cereus ATCC 14579 Site: position = -305 score = 109.78 sequence = ATGAAAGACGATGAT... Gene: BC4559: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
| CRON 3. | ||||||||||||
| hisS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -323 score = 104.7 sequence = ATTTGAACCAATAAT... Gene: BSU27560: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -297 score = 99.1 sequence = TTTTGAACCGATAAT... Gene: RBAM_024670: Histidyl-tRNA synthetase (EC 6.1.1.21) |
|
*
Bacillus licheniformis DSM 13 Site: position = -321 score = 101.96 sequence = AGCTGAACTGAAGAT... Gene: BLi02882: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Anoxybacillus flavithermus WK1 Site: position = -281 score = 121.33 sequence = TCTCGCCGATGATGG... Gene: Aflv_0730: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Gene: GK2573: Histidyl-tRNA synthetase (EC 6.1.1.21) |
2
Bacillus cereus ATCC 14579 Gene: BC4398: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: BC3317: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Bacillus halodurans C-125 Site: position = -367 score = 137.86 sequence = GGTTTCCGATGAAGA... Gene: BH1251: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*2
Bacillus clausii KSM-K16 Site: position = -274 score = 119.98 sequence = TAAAACCAATGATAA... Gene: ABC1576: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: ABC3310: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Gene: OB2020: Histidyl-tRNA synthetase (EC 6.1.1.21) |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_4376: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: Pjdr2_0932: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Histidyl-tRNA synthetase (EC 6.1.1.21) |
| aspS |
Gene: BSU27550: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: RBAM_024660: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BPUM_2396: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BLi02881: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: Aflv_0731: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: GK2572: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BC4397: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: BH1252: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: ABC1577: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: OB2019: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: Pjdr2_4375: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |