Regulog T-box(Asn) - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Asn-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - T-box
- By effector - Asn-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 2 | 1 |
| Staphylococcus capitis SK14 | 2 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 2 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 2 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 2 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 2 | 1 |
| Macrococcus caseolyticus JCSC5402 | 2 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| hisS |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -366 score = 49.83 sequence = AATCTAACTAAGATT... Gene: SA1457: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Staphylococcus capitis SK14 Site: position = -326 score = 46.56 sequence = ATTATTCTTGGAAGA... Gene: STACA0001_2389: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -322 score = 55.64 sequence = AATAAAACCGATATG... Gene: SE1312: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -186 score = 51.82 sequence = ATTGAACACAAGAAG... Gene: Sca_1242: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -291 score = 58.07 sequence = TGAAAGTATAAATGA... Gene: SH1290: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -172 score = 54.15 sequence = TATAACACAAGAACA... Gene: SSP1128: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -251 score = 85.87 sequence = ATATCAACCGTTATG... Gene: MCCL_1268: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Histidyl-tRNA synthetase (EC 6.1.1.21) |
| aspS |
Gene: SA1456: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: STACA0001_2390: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: SE1311: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: Sca_1241: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: SH1291: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: SSP1129: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: MCCL_1267: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |