Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog T-box(Ala) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ala-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 1 1
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 1 1
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 1 1
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
alaS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -288
score = 82.09
sequence = CGAATCTCGAGTGAC...

Gene: BSU27410: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -289
score = 91.08
sequence = CGAATCTCGAGTGAC...

Gene: RBAM_024510: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Bacillus pumilus SAFR-032

Site:
position = -291
score = 92.05
sequence = ACTGAATTCAATGAC...

Gene: BPUM_2380: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Bacillus licheniformis DSM 13

Site:
position = -291
score = 77.75
sequence = CGTATCTCGATTGAC...

Gene: BLi02869: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Anoxybacillus flavithermus WK1

Site:
position = -263
score = 84.77
sequence = CAAAAACGATGACGG...

Gene: Aflv_0744: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Geobacillus kaustophilus HTA426

Site:
position = -272
score = 94.66
sequence = ACATAACGCGATGAC...

Gene: GK2556: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Bacillus cereus ATCC 14579

Site:
position = -261
score = 97.49
sequence = CATTAAATCAATGAC...

Gene: BC4383: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Bacillus halodurans C-125

Site:
position = -295
score = 82.8
sequence = GTAATACGTTGATGG...

Gene: BH1267: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Bacillus clausii KSM-K16

Site:
position = -265
score = 100.14
sequence = TTATTGCGTTGATAG...

Gene: ABC1592: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Oceanobacillus iheyensis HTE831

Site:
position = -264
score = 97.57
sequence = ACTAATCACGTAGAA...

Gene: OB2009: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4346: Alanyl-tRNA synthetase (EC 6.1.1.7)
Alanyl-tRNA synthetase (EC 6.1.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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