Regulog T-box(Ala) - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ala-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - T-box
- By effector - Ala-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 1 | 1 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 1 | 1 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 1 | 1 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| alaS |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -288 score = 82.09 sequence = CGAATCTCGAGTGAC... Gene: BSU27410: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -289 score = 91.08 sequence = CGAATCTCGAGTGAC... Gene: RBAM_024510: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Bacillus pumilus SAFR-032 Site: position = -291 score = 92.05 sequence = ACTGAATTCAATGAC... Gene: BPUM_2380: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Bacillus licheniformis DSM 13 Site: position = -291 score = 77.75 sequence = CGTATCTCGATTGAC... Gene: BLi02869: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Anoxybacillus flavithermus WK1 Site: position = -263 score = 84.77 sequence = CAAAAACGATGACGG... Gene: Aflv_0744: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Geobacillus kaustophilus HTA426 Site: position = -272 score = 94.66 sequence = ACATAACGCGATGAC... Gene: GK2556: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Bacillus cereus ATCC 14579 Site: position = -261 score = 97.49 sequence = CATTAAATCAATGAC... Gene: BC4383: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Bacillus halodurans C-125 Site: position = -295 score = 82.8 sequence = GTAATACGTTGATGG... Gene: BH1267: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Bacillus clausii KSM-K16 Site: position = -265 score = 100.14 sequence = TTATTGCGTTGATAG... Gene: ABC1592: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Oceanobacillus iheyensis HTE831 Site: position = -264 score = 97.57 sequence = ACTAATCACGTAGAA... Gene: OB2009: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: Pjdr2_4346: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Alanyl-tRNA synthetase (EC 6.1.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |