Regulog Trp_leader - Corynebacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | Trp_leader |
| RFAM: | RF00513 |
| Regulation mode: | |
| Biological process: | Tryptophan biosynthesis |
| Effector: | |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By RNA motif - Trp_leader
- By pathway - Tryptophan biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium glutamicum ATCC 13032 | ||
| Corynebacterium efficiens YS-314 | 6 | 1 |
| Corynebacterium diphtheriae NCTC 13129 | 7 | 2 |
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium jeikeium K411 | ||
| Corynebacterium urealyticum DSM 7109 | ||
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium kroppenstedtii DSM 44385 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| trpE |
Gene: cg3359: Anthranilate synthase, aminase component (EC 4.1.3.27) |
*
Corynebacterium efficiens YS-314 Site: position = -185 score = 26.55 sequence = AGTGGTGGTGGCGCG... Gene: CE2868: Anthranilate synthase, aminase component (EC 4.1.3.27) |
Gene: DIP2352: Anthranilate synthase, aminase component (EC 4.1.3.27) |
Gene: cauri_2507: Anthranilate synthase, aminase component (EC 4.1.3.27) |
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Anthranilate synthase, aminase component (EC 4.1.3.27) |
| trpG |
Gene: cg3360: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: CE2869: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: DIP2353: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
Gene: cauri_2508: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
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Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
| trpD |
Gene: cg3361: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: CE2870: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: DIP2354: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: cauri_2509: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
| trpC |
2
Corynebacterium glutamicum ATCC 13032 Gene: cg2293: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Gene: cg3362: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
2
Corynebacterium efficiens YS-314 Gene: CE2871: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Gene: CE1991: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
2
Corynebacterium diphtheriae NCTC 13129 Gene: DIP1555: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Gene: DIP2355: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
2
Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1614: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) Gene: cauri_2510: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
| trpB |
Gene: cg3363: Tryptophan synthase beta chain (EC 4.2.1.20) |
2
Corynebacterium efficiens YS-314 Gene: CE2872: Tryptophan synthase beta chain (EC 4.2.1.20) Gene: CE2880: Tryptophan synthase beta chain (EC 4.2.1.20) |
*2
Corynebacterium diphtheriae NCTC 13129 Site: position = -140 score = 27.86 sequence = AGTTCTGGTGGCGCG... Gene: DIP2360: Tryptophan synthase beta chain (EC 4.2.1.20) Site: position = -174 score = 25.21 sequence = ACTGGTGGTGGCGCG... Gene: DIP2351: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: cauri_2511: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: jk0798: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: cur_1164: Tryptophan synthase beta chain (EC 4.2.1.20) |
2
Corynebacterium amycolatum SK46 Gene: CORAM0001_1437: Tryptophan synthase beta chain (EC 4.2.1.20) Gene: CORAM0001_1044: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: ckrop_0796: Tryptophan synthase beta chain (EC 4.2.1.20) |
Tryptophan synthase beta chain (EC 4.2.1.20) |
| trpA |
Gene: cg3364: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: CE2873: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: DIP2361: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: cauri_2512: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: jk0799: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: cur_1163: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: CORAM0001_1043: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: ckrop_0797: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Tryptophan synthase alpha chain (EC 4.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |